Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02278 ATGGTGAAGTCCATGAAGGCAACACTAAAATACTTAGCAGGAATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCTGAGCAAGTTACTCAAAATTGTTCTCCATTCCTTCCTTCCAATCTAACTGCTCTCATCACTGgtGCCACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGGTGCAAGGGACTTGAAGAAGGCAAGGGAAGTAAGAGACAAAATTCAAAAAGAGAGTCCAAAAGCTGAGGTTATTTTGTTGGAGATTGATCTTAGCTCTTTTAGTTCTGTACAAAGATTTTGTTCTGAGTTTTTAGCTTTAGATCTTCCACTTAATATTCTAATaAATAATGCAGGCATATTCTCTCAAGATTTGGAGTTCTCTgaagaaaaaattgagattACATTTGCCACAAATTACTTAGGACATTTTCTGTTAACAGAAATTTTACTAGACAAAATGATAGAAACAGCAGAGAAGACATGTATTCAAGGAAGAATAATAAATGTTTCTTCTGTCATACATAGCTGGGTGAAGAGACATGGTTTTTGTTTCAAAGACTTACTCAATGGAAAAAACTACAATGGAACACAAGCTTATGCTCAATCAAAATTGGCAAATATTTTGCATGCCAAAGAAATAGCTAGACAACTCAAGGCAAGAAATGCAAGAGTAACTATCAATGCAGTTCATCCAGGTATTGTAAAGACAGGAATTATTAAAGCTCATAAGGGCTTAATAACAGATTCCTTATTTTTCATTGCATCAAAGCTACTCAAATCGACATCGCAGGGTGCATCAACTACATGTTATGTGGCTTTGAGTCCAAAAACAGAAGGGATAAGTGGAAAATACTTTAGTGATTGTAATGAGAGTAAGTGTTCTCGCTTAGCAAATGATGAatcagaagctcaaaagttATGGAACAACACTCATGCCTTGCTTCACAAACGACTCCATCAAGCAACAATTTGA 1005 0.3542 MVKSMKATLKYLAGIAGPSGFGSNSTAEQVTQNCSPFLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVRDKIQKESPKAEVILLEIDLSSFSSVQRFCSEFLALDLPLNILINNAGIFSQDLEFSEEKIEITFATNYLGHFLLTEILLDKMIETAEKTCIQGRIINVSSVIHSWVKRHGFCFKDLLNGKNYNGTQAYAQSKLANILHAKEIARQLKARNARVTINAVHPGIVKTGIIKAHKGLITDSLFFIASKLLKSTSQGASTTCYVALSPKTEGISGKYFSDCNESKCSRLANDESEAQKLWNNTHALLHKRLHQATI 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02278 334 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 8 330 - -
Tsu03g02278 334 Gene3D - 39 330 - -
Tsu03g02278 334 Pfam short chain dehydrogenase 43 184 IPR002347 -
Tsu03g02278 334 PRINTS Glucose/ribitol dehydrogenase family signature 233 250 IPR002347 -
Tsu03g02278 334 PRINTS Glucose/ribitol dehydrogenase family signature 119 130 IPR002347 -
Tsu03g02278 334 PRINTS Glucose/ribitol dehydrogenase family signature 210 229 IPR002347 -
Tsu03g02278 334 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Tsu03g02278 334 PRINTS Glucose/ribitol dehydrogenase family signature 43 60 IPR002347 -
Tsu03g02278 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 IPR002347 -
Tsu03g02278 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 210 229 IPR002347 -
Tsu03g02278 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 183 IPR002347 -
Tsu03g02278 334 PANTHER RETINOL DEHYDROGENASE 8 330 - -
Tsu03g02278 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 303 IPR036291 -
Tsu03g02278 334 CDD retinol-DH_like_SDR_c_like 43 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02278 Tsu-Chr3 25480058 25484125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02278 23 252 Acyl Lipid Metabolism Gene Families AT1G63380 28.571 4.41e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02278 - - gmx:100799729 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02278 03 25480058 25484125 Tsu03g02278 03 25480058 25484125 ECH
Tsu04g02606 04 29421441 29424444 Tsu03g02278 03 25480058 25484125 PCT