Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02601 ATGGCGCCAAGCATAACAAATCTTAAAGAAACACCTCCCTTCCATGCTAATTCACCACCCACAATAAAACTAGAAAACTCAACATTCTTAGCCAACAACAACCCAATCCTCACTCAAGTCCCACCAAACATAACTGTCACTCCACCACCTCACTTTTCCGGTTGCTTCGTCGGCTTTGAAGCTGACGAACCACTAAACCGCCACGTGGTTTCCATCGGCACCCTCATCGGAATAAGATTCACAAGCATATTCAGATTCAAACTATGGTGGAGCACTCATTGGACAGGAAACAAAGGCAGCGACATAGAAAACGAAACACAAATGATAATACTCGAAAACGACATCGTTAAAGAACGTCCTTATGTTCTTCTCTTACCACTCATTGAAGGTTCTTTCAGAGCTTCACTTCAACCAggatcaaacaaaaacaaccacgTGGATATTTGCATGGAAAGTGATTCCACACGTGTCATTGAATCATCTTTCAAAACATGTTTATATATTCATGCAAACTTTGATCCTTATATTTTAATGAACGAAGCGATTAAGGTTGTTAGAGACCACTTAGGAACATTCAAACTTCTAGAAGAAAAAACAGTACCTGATATTGTTGATAAATTTGGATGGTGTACATGGGATGCATTTTATCTTAAGGTGCACCCTCAAGGTGTAAAAGAAGGTATTAAAGGTTTAGTAGAAGGTGAGTGTCCTCCAAGTTTTGTAATCATTGATGATGGTTGGCAAAATTTTTGTCgtgatgatgaagatttttttaacgGTGGTGATTGTTTAAGTTTGAATTGTGCTATACCAGGTGAACAAATGTTGGGTAGGTTAATAagttttgaagaaaataaaaaatttaaggagTACGATCAATGTTTAGGTATGGGTGGATTTGTGAGGGATTTAAAGAGGGAATTTGGGGGTTTGTTAAAGGAGGTTTATGTGTGGCATGCTTTTTGTGGGTATTGGGGTGGGATTAGGCCTAATGTTGAAGGAATGCCGGAGTCGGTGGTGGTGGAGGCGAAGTTGTCGCCGGGGGCTGAGAAGTGTATGACGGATTTGGCGGTGGTGAAGATAGTTGAGAATGGTGTTGGATTGGTGAAGCCAGAAGAGGCGTGTAAGTTGTATGATGAACTTCATTCTCATCTTAAATCTGTTGGTGTTGATGGTGTTAAGATTGATGTCACACATGTTCTAGAGATGCTATCAGAGGACTATGGTGGCCGTGTTGAACTTGCCAAAGCATACTATAAGGCACTAACTGATTCCGTGAGGAAACATTTCAAAGGCAATGGTGTCATTTCCAGTATGCAACAATGCAACGATTTCATGTTCCTTGGTACACAAACCATATCACTTGGACGAGTTGGTGATGATTTTTGGTGCACTGACCCAGCTGGTGATCCAAACGGTACATATTGGTTACAAGGATGTCACATGGTGCACTGTGCATATAACAGTTTATGGATGGGAAATTTTATACATCCAGATTGGGACATGTTTCAATCTCATCATGCTTGTTCTGAATTTCATGCTGCTTCTCGTGCCATATCTGGTGGACCAATTTATGTTAGTGACTCTGTTGGAAACCACAACTTCAAGTTGCTTAAGAAACTGGTTTTACCTGATGGAACAATTTTGAGGTGTCAACATTATGCACTTCCAACTAGAGACTCTTTATTTGTTGACCCTTTGCATGATGGGAAAACAATGCTCAAAATTTGGAACCTTAACAAATATAGTGGAGTTTTGGGTCTATTCAATTGCCAAGGAGGAGGATGGTGTCCTTTGACTAGAAGAAACAAAAGTGCCTCTGAATTTTCTCACTCTGTAACTTGCTTTGCAAGTCCCAAAGACATTGAATGGAACAAAGGGAAAACCCCAATATGCATCAAAGATGTTGATGTATTTGCTGTCTACATGTTTAAGGATGAAAATTTGAAGCTACTACAGAGCACAGAAAGTGTACAAGTTTCACTTGAGCCTTTTAGTTTTGAGCTAATGACGGTTTCTCCGGTGACGGTTTTAcctaaaaaatcaattcaatttgcACCAATTGGATTGGTGAACATGCTCAACTCTGGGGGTTCAATTCTGTCATTGGAATTTGATGGAGATGAAAATTTGGTGAAAATTGGGGTGAGGGGTCAGGGAGAAATGAAGGTATTCGCGTCGCAGAAGCCGATAAGTTGTTTGATTGATGAAGTGTCTGtgaaatttgaatatgatgATAGTATGGTAGTGCTTCATGTTCCTTGGCCTGGTTCTTCAAAGTTGTCAATGGTTGAATATTTATTCTAA 2307 0.3845 MAPSITNLKETPPFHANSPPTIKLENSTFLANNNPILTQVPPNITVTPPPHFSGCFVGFEADEPLNRHVVSIGTLIGIRFTSIFRFKLWWSTHWTGNKGSDIENETQMIILENDIVKERPYVLLLPLIEGSFRASLQPGSNKNNHVDICMESDSTRVIESSFKTCLYIHANFDPYILMNEAIKVVRDHLGTFKLLEEKTVPDIVDKFGWCTWDAFYLKVHPQGVKEGIKGLVEGECPPSFVIIDDGWQNFCRDDEDFFNGGDCLSLNCAIPGEQMLGRLISFEENKKFKEYDQCLGMGGFVRDLKREFGGLLKEVYVWHAFCGYWGGIRPNVEGMPESVVVEAKLSPGAEKCMTDLAVVKIVENGVGLVKPEEACKLYDELHSHLKSVGVDGVKIDVTHVLEMLSEDYGGRVELAKAYYKALTDSVRKHFKGNGVISSMQQCNDFMFLGTQTISLGRVGDDFWCTDPAGDPNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSHHACSEFHAASRAISGGPIYVSDSVGNHNFKLLKKLVLPDGTILRCQHYALPTRDSLFVDPLHDGKTMLKIWNLNKYSGVLGLFNCQGGGWCPLTRRNKSASEFSHSVTCFASPKDIEWNKGKTPICIKDVDVFAVYMFKDENLKLLQSTESVQVSLEPFSFELMTVSPVTVLPKKSIQFAPIGLVNMLNSGGSILSLEFDGDENLVKIGVRGQGEMKVFASQKPISCLIDEVSVKFEYDDSMVVLHVPWPGSSKLSMVEYLF 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02601 768 Pfam Raffinose synthase or seed imbibition protein Sip1 23 751 IPR008811 -
Tsu04g02601 768 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE-RELATED 1 768 - -
Tsu04g02601 768 PANTHER - 1 768 IPR008811 -
Tsu04g02601 768 SUPERFAMILY (Trans)glycosidases 204 553 IPR017853 -
Tsu04g02601 768 Gene3D Aldolase class I 206 541 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02601 Tsu-Chr4 29370713 29376340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02601 23 768 Glycoside Hydrolase AT5G40390 59.351 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02601 K06617 - gmx:100798883 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02601 04 29370713 29376340 Tsu03g02283 03 25651402 25657017 ECH
Tsu04g02601 04 29370713 29376340 Tsu04g02601 04 29370713 29376340 ECH