Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02547 ATGGAAATGAAAAATCTCTTGTTGGTTTCCTTATCCCTTGCTTTGGTTTTGGGATTAGCCAATAGCTTTAATTTCCATGAGAATGATTTAGCATCAGAAGAAAATTTGTGGGATTTATATGAGAGATGGAGAAGTCACCATACAGTTACTAGAAGCCTTGATGAAAAGCATAATCGCTTTAATGTGTTTAAAGCCAATGTTATGCATGTTCATAATAGTAATAAATTGGATAAGCCTTATAAGCTTAGGTTGAATAAGTTTGCTGATTTGACTAATTATGAATTTAGAAGCATTTATGCTGATTCTAAGGTTAATCATCATAGAATGTTTCGTGGCATGTCACATGACAATGGAAGTTTTATGTATGAGAATGTGAAGCATGTTCCTTCTTCTATTGATTGGAGGAAGAAAGGTGCTGTCACTAGTATAAAGGATCAAGGCCAATGTGGTAGTTGTTGGGCGTTTTCAACCATTGTAGCTGTTGAAGGTATTAACCAAATAAAGACACAAAAACTAGTATCATTATCTGAGCAAGAACTTGTGGATTGTGACAATGAACTGAATCAAGGATGCAATGGTGGGTTAATGGAATATGCTTTTGAGTTCATCAAGCAAAATGGTATAACAACCGATAGCAATTATCCTTATGCTGCAAAAGATGAAACATGTAACCTACAAAAGGAGAATAAGCCAGTAGTGTCAATTGATGGCCATGAGAATGTCCCTGCAAACAATGAAGCTGCATTGTTGAAAGCTGCTGCCAATCAACCTATTTCGGTAGCCATTGATGCCGGAGGATCTGATTTCCAATTTTATTCGGAGGGAGTATTTACTGGAGATTGTGGCACTGAGCTGAATCATGGAGTAGCAATTGTAGGGTATGGAACAACTCAAGATGGAACCAAATATTGGACAGTGAGAAACTCTTGGGGAAGTGAATGGGGAGAACAAGGTTACATTAGAATGCAAAGAGACACATCTCAAAAGGAAGGTCTATGTGGCATAGCTATGGAAGCTTCTTATCCAATCAAAACATCATCTACCAACCCAACAAAAATTTCATCTCCTAAAGATGAACTTTAA 1083 0.3693 MEMKNLLLVSLSLALVLGLANSFNFHENDLASEENLWDLYERWRSHHTVTRSLDEKHNRFNVFKANVMHVHNSNKLDKPYKLRLNKFADLTNYEFRSIYADSKVNHHRMFRGMSHDNGSFMYENVKHVPSSIDWRKKGAVTSIKDQGQCGSCWAFSTIVAVEGINQIKTQKLVSLSEQELVDCDNELNQGCNGGLMEYAFEFIKQNGITTDSNYPYAAKDETCNLQKENKPVVSIDGHENVPANNEAALLKAAANQPISVAIDAGGSDFQFYSEGVFTGDCGTELNHGVAIVGYGTTQDGTKYWTVRNSWGSEWGEQGYIRMQRDTSQKEGLCGIAMEASYPIKTSSTNPTKISSPKDEL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02547 360 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Tsu04g02547 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Tsu04g02547 360 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Tsu04g02547 360 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 350 - -
Tsu04g02547 360 Gene3D Cysteine proteinases 15 345 - -
Tsu04g02547 360 SMART Inhibitor_I29_2 40 95 IPR013201 -
Tsu04g02547 360 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Tsu04g02547 360 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Tsu04g02547 360 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Tsu04g02547 360 SUPERFAMILY Cysteine proteinases 35 343 IPR038765 -
Tsu04g02547 360 Coils Coil 357 360 - -
Tsu04g02547 360 CDD Peptidase_C1A 129 342 IPR039417 -
Tsu04g02547 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Tsu04g02547 360 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 350 - -
Tsu04g02547 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Tsu04g02547 360 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02547 Tsu-Chr4 28713188 28717171 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02547 K16292 - gmx:100806581 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02547 04 28713188 28717171 Tsu04g02547 04 28713188 28717171 ECH
Tsu04g02547 04 28713188 28717171 Tsu03g02346 03 26480119 26482043 PCT