Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02346 ATGACTATTAAgaagctattgttgattgttctATCTATTGCTTTGGTTCTTGAATTATCTGAGAGCTTTGATTTCCATGACAAAGATGTGTCCTCGGACGAAAGCTTGTGGGACTTATACGAGCGATGGAGGAGTCACCACACGGTTTCTCGCAATTTAGACGAGAAACACAAGCGATTTAATGTGTTCAAAACAAATGTGATGCATGTACATAACACCAATAAAATGGATAAGCCTTATAAGTTGAAACTTAACAAGTTTGCTGATATGACCAACCATGAATTTAGGACTACTTATGCTGGATCAAAGGTTAATCACCACAGAATGTTCCGAGGCACGCCACGTGGAAATGGTACCTTCATGTATGAGAATTTTAACAACGTTCCTACTTCAGTCGATTGGAGGAAGAAAGGTGCTGTTACTCCTGTCAAGGATCAAGGCCAATGTGGTAGTTGTTGGGCTTTTTCAACAGTTGTAGCGGTTGAAGGCATAAACCAAATCAAGACAAATAGGCTAGTGCCCTTGTCTGAACAAGAGCTTATAGATTGTGACACTAAAGAAAATCAAGGATGCAATGGTGGCCTAATGGAATATGCTTTTGAGTACATTAAGCAAAAAGGTGGCTTAACAACAGAAAGCTACTACCCTTACGAAGCAAATGATGGATCATGTGATGCAACAAAGGAAAATGTCCCAGCTGTGTCAATTGATGGCCATGAGAATGTTCCGGCTAACGATGAAGATGCATTGCTCAAAGCTGTTGCTAACCAACCTGTATCCGTAGCCATAGATGCCGGAGGATCCGATTTCCAATTCTACTCTGAGGGAGTATTTACCGGTAAATGTGGCAACGAGCTAGATCATGGTGTAGCAATAGTAGGATATGGAACAACTGTCGACGGAACGAATTACTGGATTGTGAGAAACTCTTGGGGAGCTGAATGGGGAGAACAAGGTTATATCAGAATGCAAAGGAATGTATCTGAGAAGGAAGGACTTTGTGGCATAGCTATGGAGGCTTCCTACCCAATTAAAAACTCGTCCATAAATCCAACAGGACCTATATCATCATCTATTAAGGATGAGCTTTGA 1092 0.4048 MTIKKLLLIVLSIALVLELSESFDFHDKDVSSDESLWDLYERWRSHHTVSRNLDEKHKRFNVFKTNVMHVHNTNKMDKPYKLKLNKFADMTNHEFRTTYAGSKVNHHRMFRGTPRGNGTFMYENFNNVPTSVDWRKKGAVTPVKDQGQCGSCWAFSTVVAVEGINQIKTNRLVPLSEQELIDCDTKENQGCNGGLMEYAFEYIKQKGGLTTESYYPYEANDGSCDATKENVPAVSIDGHENVPANDEDALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGKCGNELDHGVAIVGYGTTVDGTNYWIVRNSWGAEWGEQGYIRMQRNVSEKEGLCGIAMEASYPIKNSSINPTGPISSSIKDEL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02346 363 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 351 - -
Tsu03g02346 363 SMART Inhibitor_I29_2 40 95 IPR013201 -
Tsu03g02346 363 Gene3D Cysteine proteinases 13 346 - -
Tsu03g02346 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Tsu03g02346 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Tsu03g02346 363 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Tsu03g02346 363 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Tsu03g02346 363 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Tsu03g02346 363 SUPERFAMILY Cysteine proteinases 33 344 IPR038765 -
Tsu03g02346 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Tsu03g02346 363 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 351 - -
Tsu03g02346 363 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Tsu03g02346 363 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Tsu03g02346 363 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Tsu03g02346 363 CDD Peptidase_C1A 129 343 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02346 Tsu-Chr3 26480119 26482043 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02346 K16292 - gmx:548011 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02346 03 26480119 26482043 Tsu03g02346 03 26480119 26482043 ECH
Tsu04g02547 04 28713188 28717171 Tsu03g02346 03 26480119 26482043 PCT