Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02526 ATGGAAGCCATGGCCATGTTCACCGGAAGCAATATCTGTGTAACATCATCCTCTCTCCTAACCACCACCAACTCAAACACAACAACAAGAAGAACAATAGCCTCTCAATTACGCACCAGAAGCACCACCCACTTATCAGCATTTCCTTCAAAATCCCAtcttttttcatcttcttctactACTTCCTATGCCAGAACCATCCGCACCAGATGCAGCACCGAATCCGGCATCTTCCTTCCCCGCTTAATTGCTGCTCTTGAACAAGTTGACAAAACTTACATTATGGTGAAGCCCGATGGCGTGCAACGTGGTCTTGTGGGTGAGATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTAATTGGCTTGAAGCTCTTCCAATGTTCAAAAGAATTAGCCGAGGAGCATTACAAGGACCTAAATCAAAAACCTTTCTTCCCTAAGATGATTAACTACATTACTTCAGGCCCTGTTGTGTCCATGGCTTGGGAGGGTATTGGAGTAGTGCCATCAGCACGTAAGCTTATAGGGGCTACAGATCCTCTTCAAGCTGAACCAGGCACAATAAGAGGAGACCTTGCTGTTCAAAGAGGAAGGAATGTTATCCATGGCAGTGACAGTCCTGAAAATGGCGAGCGTGAAATAGCTCTATGGTTCAAGGAAGGTGAATTGTGCGAATGGACTCCTATCCAACAACCATGGCTAATAGAGTGA 714 0.4398 MEAMAMFTGSNICVTSSSLLTTTNSNTTTRRTIASQLRTRSTTHLSAFPSKSHLFSSSSTTSYARTIRTRCSTESGIFLPRLIAALEQVDKTYIMVKPDGVQRGLVGEIISRFEKKGFKLIGLKLFQCSKELAEEHYKDLNQKPFFPKMINYITSGPVVSMAWEGIGVVPSARKLIGATDPLQAEPGTIRGDLAVQRGRNVIHGSDSPENGEREIALWFKEGELCEWTPIQQPWLIE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02526 237 CDD NDPk_I 91 219 - -
Tsu04g02526 237 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 31 236 - -
Tsu04g02526 237 Pfam Nucleoside diphosphate kinase 91 223 IPR034907 -
Tsu04g02526 237 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 31 236 - -
Tsu04g02526 237 PRINTS Nucleoside diphosphate kinase signature 92 114 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tsu04g02526 237 PRINTS Nucleoside diphosphate kinase signature 200 219 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tsu04g02526 237 PRINTS Nucleoside diphosphate kinase signature 136 155 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tsu04g02526 237 PRINTS Nucleoside diphosphate kinase signature 156 173 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tsu04g02526 237 PRINTS Nucleoside diphosphate kinase signature 177 193 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tsu04g02526 237 SMART ndk_5 89 226 IPR034907 -
Tsu04g02526 237 Gene3D - 85 237 IPR036850 -
Tsu04g02526 237 SUPERFAMILY Nucleoside diphosphate kinase, NDK 89 236 IPR036850 -
Tsu04g02526 237 Hamap Nucleoside diphosphate kinase [ndk]. 89 224 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Tsu04g02526 237 ProSitePatterns Nucleoside diphosphate kinases active site. 200 208 IPR023005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02526 Tsu-Chr4 28518213 28521904 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02526 K00940 - pop:7458369 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02526 04 28518213 28521904 Tsu04g02526 04 28518213 28521904 ECH
Tsu04g02526 04 28518213 28521904 Tsu05g01447 05 13737889 13740925 PCT