Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02502 atgatgAGTATGGAATTCGAGCGGGTTCTTAGTTATTTTGATGAAGATGGTGACGGAAAGATTTCGCCGAATGAGTTAAGGAGTAGAATGATGAAGATTGGCGGAGAGTTTCAATTAAAAGAAGCGGAAATTGCGATCGAGGCATTGGATTCTGATGGTGATGGATTATTGTGTTTGGAGGATTTGATAAAGCTTATGGAATCAGGGGGAGAGGAAGAAAAATTGAAGGATTTGAGAGAGGCTTTTGAAATGTATGATAATGAAGGGTGTGGGTTCATAACACCGAAGAGTTTGAAGAGGATGTTGAAAAAATTGGGGGATTCTAAGTCTATTGAGGAATGTAAATTGATGATTGGTAGGTTTGATTTGAATGGGGATGGTGTTCTTAgttttgaagaattcaaaatcaTGATGGAGTGA 420 0.3643 MMSMEFERVLSYFDEDGDGKISPNELRSRMMKIGGEFQLKEAEIAIEALDSDGDGLLCLEDLIKLMESGGEEEKLKDLREAFEMYDNEGCGFITPKSLKRMLKKLGDSKSIEECKLMIGRFDLNGDGVLSFEEFKIMME 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02502 139 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
Tsu04g02502 139 Gene3D - 71 139 - -
Tsu04g02502 139 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 139 - -
Tsu04g02502 139 CDD EFh 77 138 IPR002048 GO:0005509
Tsu04g02502 139 CDD EFh 5 66 IPR002048 GO:0005509
Tsu04g02502 139 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Tsu04g02502 139 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Tsu04g02502 139 Pfam EF-hand domain pair 9 67 IPR002048 GO:0005509
Tsu04g02502 139 Pfam EF-hand domain pair 76 138 IPR002048 GO:0005509
Tsu04g02502 139 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Tsu04g02502 139 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 139 - -
Tsu04g02502 139 SUPERFAMILY EF-hand 5 138 IPR011992 -
Tsu04g02502 139 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Tsu04g02502 139 ProSiteProfiles EF-hand calcium-binding domain profile. 109 139 IPR002048 GO:0005509
Tsu04g02502 139 SMART efh_1 113 139 IPR002048 GO:0005509
Tsu04g02502 139 SMART efh_1 77 105 IPR002048 GO:0005509
Tsu04g02502 139 SMART efh_1 41 69 IPR002048 GO:0005509
Tsu04g02502 139 SMART efh_1 5 33 IPR002048 GO:0005509
Tsu04g02502 139 Gene3D - 2 70 - -
Tsu04g02502 139 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02502 Tsu-Chr4 28270715 28271220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02502 5 138 EF-hand Containing Proteins AT1G76650 49.254 9.38e-39 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02502 K13448 - gmx:100816563 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02502 04 28270715 28271220 Tsu03g02163 03 23137538 23147082 ECH
Tsu04g02502 04 28270715 28271220 Tsu04g02502 04 28270715 28271220 ECH