Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02163 ATGAGAGAGGTGAGAGACGGCGAACGACGGGTCCAAGACAACGATCGTCTTCTTCAACACGAACGCCGCCCGTTTCACCGGTGGCCTTCATGGCGTTCGCGATCTCCATCTCCGTCTGAGCGTTTTCACGGGAGGGTTGGGCCATATGCCAGGGAGGCAGAAATTGGGGGGGAACAGGGTGATTGGATCTGGGTGAGTCGGCGACGGAGGAAAGCGAAGGGATCGGAATGGCTAGGACGAGACAGACAAGCACAAGATTTCGGCTGCGACGGACGGTTTTCTACATGGCACGAAGGAAACTTTGATCACGGGTATGACAGGGGTTTCAATCGCAGGAACAGTAGTTTTTCTGGTGATGATTGCCGGCGATTTGGCAGGAGCTATCAGGGTGGGGCTCGACGATTTCGCTCTAATGGAAGAGGCAGATCAGTAATTCGACGTTTTCATCGTTCTATTTCGCGTGATAAGGCGAAAATTCTTCATCGTACTGTGCTACAGGGAGCAAATGTGGAACAATTACAAGGATACGACTCTACCGGCAAGAGGAATTCCATCAATGGTGCTGCTGGTTCGGATACTTCTCAGGTATTGTATTTTTCGAATTTTCCAGACAATCTAAGTTTCGTAGATTTGCGCAAAGGATTGGAGGTGTGTGGTATTCTGGATGACGTTTATGTTTCACGGTATAGAAATAATCAAGGACTTAGGTATGGTTTTGCGAAATTTCTAAAAGTCAAAGATGTGGAAAAATTGAGAAAAGCTCTTAATTCTATTCAGTTTTGGGAGCTTCCTCAGGTTTTGATTGATAACAAATTAACATCTATCCGGATAATTGAAGACTCGGAGTTCGGTAAAATGTTTGATGCTTGCTTGATCGATTCGGAGGAGGATAATTATTCGTTGTGCTCGATTCATACTGGTATGCAAGATGAAGAGCCTCTTGTGGAGGCATTGGTTCAAAATTTACACGATGATTGGGGTGCTAATGTGCATCACGAAGATAATCTAGGTTGCGCCGAGAATATTTCAAAACGGGCTAAGGTTTCTTCAGCAGAGAATCCGATTAATTCCAAAGGGATTAACCTTTCAGCTGATGACTGCTGTAGGAAAGACATACATAAACAATGGAAACAGCAATCGAAAGGCAGGTCGAAATATCCTTATCGAAGGAAGGTTTTCCCTTCGGTGGTTGGTTTAAAGAAAATAGCACGACTTTCTGAGGAGGACAGGTTAGCGTTGATTCGGTCTCTCAAAAAATCAAGGTGTATGAAACGAGAGAAAAAGTCTCCTAACTCAGGCTTTAATATTATGATGACGGCTATGGTTTCGAACAATTTATTTACTCCTGATGCTATAGGGAAGAGGCAAGAGGTGAAGATTTCTCATTTGCAGTTCGCAGATGACACTCTTTTAGTAGGTAACAAGAGTTGGGCTAATGTTCGTGCTCTTAAGgcaattttattactttttgaaGCTACATCGggtttaaaaatcaattttcataaGAGTATGTTATTCGGTGTGAACATTAATGTGACTTGGCTTCATGAAGCAGCTGTGGTATTAGGTTGTCGCCACGGTCAACTTCCTTTTCTGTATCTGGGGTTACCGATAGGTGGTGATCCGAGAAAATTGTGTTTCTGGTATCCGTTGGTTGATAGAATTCGAAAGAGGTTGTCTGGGTGGAAGTGCAAAAATCTGTCTTATGGAGGTCGGTTAATCTTATTGAAATTTGTCTTGTCTTCCATTCCGgtctattttctttctttcttcaaagctcccaCAGGTATCATTTCTACCcttgaatctattttttgtcaatttttttgggGTGGGTGTGAGGCTAATCGTAAAATTGCATGGATTAAATGGGATACTATTTGTTTGAATCGGGAGAACGGAGGGTTGGGGGTGAGGAGACTGAAGGAATTTAATATCTCGTTATTGGGAAAATGGGTGTGGCGGTGTTTAGTTGAGAATGATAGTCTATGGAGCTTAGTCTTACGAGCTAAGTATGGAGAGGAAGGTGGGAGGGTTCGGTTTTCTGAGGGAGTCGGATCGTCATGGTGGCGTGGTTTGAATACAGTTAGGTCAGGTGTAGGATTACGAGATGGCAGGTGGCTGGTAGACAACATAAGGAGAAAGGTCGGTGGCGGTTGTGGGTCTCTATTTTGGTTAGACCCATGGTTGGAGGATAATCCACTTAGTAGATCTTTTAGCAGATTGTATGATTTAgctgttgataaaaatatattggtAGCCGATATGTTTGCGGCTGGTTGGGGGGTTGGAGGTGAGGCTTGGAAGTGGCGGAGGAGGTTGTTTGCATGGGAGGAGGAGTTAGTTACAGGGTGTATTGCTAGGCTGTCTAACGTTTCTTTGCAGGTTGGAGTTTCCGATAGCTGGGTGTGGCAATTACACAATTCAGGGTGCTACTCAGTTAAATCGGCTTACTCTCATTTAACGGCTACTGAAGTTCGGCTTAATGGAAATTTTGACAAGTTCCTTTGGTTACGTGCGTCGATTATGGCTCATGTTATTACAATGGCTTGGTGTTTCAACCGCTCTTCAGGATATTttgatgaagatggtgatggGAAGGTTTCACCAACAGAGCTAAGACATAAGCTAAGAGCAATGGGAGAAGAGCTTTTGTTGAAAGAAGCTGAAATGGCTATTGAAGCAATGGATTCAGATGGTGATGGTTATTTGAGTTTGGAGGATTTGATCGCTTTGATGGAGGAAGGTGGGGAGGAACAAAAGTTGAAAGATTTGAGAGAAGCATTTGAGATGTATGATAGTGAAAAATGTGGTTTTATAACTCCAAAGAGTTTGAAGAGGATGCTTAAGAAGATTGGGGAATCTAAGTCTATTGATGAATGTAAAGCTATGATTAAGCATTTTGATTTGAATGGGGATGGTTTGCTTAGCTTTGATGAATTCACAATAATGATGCAGTGA 2961 0.4154 MREVRDGERRVQDNDRLLQHERRPFHRWPSWRSRSPSPSERFHGRVGPYAREAEIGGEQGDWIWVSRRRRKAKGSEWLGRDRQAQDFGCDGRFSTWHEGNFDHGYDRGFNRRNSSFSGDDCRRFGRSYQGGARRFRSNGRGRSVIRRFHRSISRDKAKILHRTVLQGANVEQLQGYDSTGKRNSINGAAGSDTSQVLYFSNFPDNLSFVDLRKGLEVCGILDDVYVSRYRNNQGLRYGFAKFLKVKDVEKLRKALNSIQFWELPQVLIDNKLTSIRIIEDSEFGKMFDACLIDSEEDNYSLCSIHTGMQDEEPLVEALVQNLHDDWGANVHHEDNLGCAENISKRAKVSSAENPINSKGINLSADDCCRKDIHKQWKQQSKGRSKYPYRRKVFPSVVGLKKIARLSEEDRLALIRSLKKSRCMKREKKSPNSGFNIMMTAMVSNNLFTPDAIGKRQEVKISHLQFADDTLLVGNKSWANVRALKAILLLFEATSGLKINFHKSMLFGVNINVTWLHEAAVVLGCRHGQLPFLYLGLPIGGDPRKLCFWYPLVDRIRKRLSGWKCKNLSYGGRLILLKFVLSSIPVYFLSFFKAPTGIISTLESIFCQFFWGGCEANRKIAWIKWDTICLNRENGGLGVRRLKEFNISLLGKWVWRCLVENDSLWSLVLRAKYGEEGGRVRFSEGVGSSWWRGLNTVRSGVGLRDGRWLVDNIRRKVGGGCGSLFWLDPWLEDNPLSRSFSRLYDLAVDKNILVADMFAAGWGVGGEAWKWRRRLFAWEEELVTGCIARLSNVSLQVGVSDSWVWQLHNSGCYSVKSAYSHLTATEVRLNGNFDKFLWLRASIMAHVITMAWCFNRSSGYFDEDGDGKVSPTELRHKLRAMGEELLLKEAEMAIEAMDSDGDGYLSLEDLIALMEEGGEEQKLKDLREAFEMYDSEKCGFITPKSLKRMLKKIGESKSIDECKAMIKHFDLNGDGLLSFDEFTIMMQ 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02163 986 SUPERFAMILY EF-hand 860 985 IPR011992 -
Tsu03g02163 986 SUPERFAMILY RNA-binding domain, RBD 133 261 IPR035979 GO:0003676
Tsu03g02163 986 CDD RRM_SF 197 260 - -
Tsu03g02163 986 ProSitePatterns EF-hand calcium-binding domain. 897 909 IPR018247 -
Tsu03g02163 986 Gene3D - 848 914 - -
Tsu03g02163 986 ProSiteProfiles EF-hand calcium-binding domain profile. 920 955 IPR002048 GO:0005509
Tsu03g02163 986 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 859 986 - -
Tsu03g02163 986 Pfam EF-hand domain pair 860 913 IPR002048 GO:0005509
Tsu03g02163 986 Pfam EF-hand domain pair 923 986 IPR002048 GO:0005509
Tsu03g02163 986 CDD EFh 860 913 IPR002048 GO:0005509
Tsu03g02163 986 ProSiteProfiles EF-hand calcium-binding domain profile. 860 883 IPR002048 GO:0005509
Tsu03g02163 986 SMART efh_1 960 986 IPR002048 GO:0005509
Tsu03g02163 986 SMART efh_1 848 880 IPR002048 GO:0005509
Tsu03g02163 986 SMART efh_1 888 916 IPR002048 GO:0005509
Tsu03g02163 986 SMART efh_1 924 952 IPR002048 GO:0005509
Tsu03g02163 986 ProSiteProfiles EF-hand calcium-binding domain profile. 884 919 IPR002048 GO:0005509
Tsu03g02163 986 Gene3D - 177 266 IPR012677 -
Tsu03g02163 986 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 859 986 - -
Tsu03g02163 986 ProSiteProfiles EF-hand calcium-binding domain profile. 956 986 IPR002048 GO:0005509
Tsu03g02163 986 ProSitePatterns EF-hand calcium-binding domain. 861 873 IPR018247 -
Tsu03g02163 986 ProSitePatterns EF-hand calcium-binding domain. 969 981 IPR018247 -
Tsu03g02163 986 Gene3D - 915 986 - -
Tsu03g02163 986 CDD EFh 924 986 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02163 Tsu-Chr3 23137538 23147082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02163 824 986 EF-hand Containing Proteins AT1G76640 41.667 4.02e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02163 - - mtr:MTR_3g081050 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02502 04 28270715 28271220 Tsu03g02163 03 23137538 23147082 ECH
Tsu03g02163 03 23137538 23147082 Tsu03g02163 03 23137538 23147082 ECH