Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02499 ATGAACAATAACAATAATCCACTCAAGAATCCGGCGACGGCGGCGCCACCGTCGTTTTTAGTTAATTCATCAATCCCTATTAACCCACCACAACCAATTCATCTTCTCACTCAGTCTCAGCCCCAAATTCAAGGTTCTTCTTCAACATTCCCTGGTCATTTTCAGTTATCACAACCTCAACCCCATGTAATtgcacaacaacaacaacaacaacaaccacaatttTCAAACCCTCGTTCTCACCCTCAAATCCAACAACAACAGCACAATCAGCAACAACAGCAGAAGCAGCAACAATCTGTTAGCCAAATGCATACTAACAGTAACACTAATGTGGGTTCTCCTGCAACTGCGGTGACAACTACTACTGCTACTACTACGACTACATCTGCAAAGCGCGCGAATCAGAAGTCGAGCTCGCGTCCACAAGGTTCGCCTAGTGGTAATCAAACATCTGCTTTTAAGACTATGGAGTTAACTCCTGCTCCTTTAAGGAAAAAGAGGAATTTATCGGAGAATTTAATACCTGAAAAAGTGGCTAAGATTGTGCCTGAGTCTGCAATTTATACTCGGTTACTTGAACTCGAGGCTCAGATAGATGCTACTTTGAATAGGAAAAAGATTGATGTGCAGGAGGCTATTAAGAATCCTCATTCTGTTAGGAAAACTCTTCGTGTTTATGTGTATAATACGTTTTTGAATCAGACAAAATTGGATTCTGGGAAGGTTGGTGGTGTTGAAGAGCCTTCTTGGTCGCTTAGGCTAACGGGAAGGATATTGGAAGAAGACAGTAAGGATTCTGTTGTGGGAGGGGTTTCGAAAAAGGGAAGTTTTTCCTACCCGAAGTTTTCGGCTTTCTTTAAGAAAATTACGGTGTATTTGGATCAGGGGTTCTACCCGGATAATCATGTTATGGTATGGGATAGTGCTCGTTCGTCTGCACAACGGGATGGTTTTGAGGTGAAGAGGAAAGGAGACAAAGAATTTACTGCAGTTATTAGGTTAACTATGAATTACTCGCCTGAGAAGTTTATGGTTTCAACACCGTTGGCTAAAGTTTTAGGGATTGAGTTTGATACCCGTCCTAGGATAATGGCGGCTCTATGGAACTATGTGAAGTTCAAGAAGTTACAGAGCCCGAATGACCCTTCATTCTTCATGTGTGATGCTTCTCTTCAAAAAGTGTTTggggaagaaaaaatgaaattttcctTGGCTTCACAGAAAATATCACAGCATTTGTCACAACCACAGCCTATACATCTGGAGCATAAAATCAAGCTTTCTGGAAATTCTCCTGCTGGAACTGCGTGTTATGATGTGCAGGTCGATGTGCCTCTTCCACTACAGAAAGATATGTCTGCACTCTTAACAAGTATGGAGAGTCACAAAGAAATTGATGCTTTTGATGAAGTGATTTGTACGTCCGTAAAGAAGATCCATGAGCATCTTAGGAGACGAGCTTTCCTTCTTGGCTATAGTCAGTCTCCGGCAGAGTTTATTAATGCCTTGATAGCTTCTCAGGGCAAGGATTTAAAGCTTGTTGCTGGAGATGCCAGCCATAATGCAGAAAAGGAACAACGTTCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGTCATTCGCTATCTGAACCGGAAAAGTGCTCGAACTGATGCTCCTTGA 1668 0.4089 MNNNNNPLKNPATAAPPSFLVNSSIPINPPQPIHLLTQSQPQIQGSSSTFPGHFQLSQPQPHVIAQQQQQQQPQFSNPRSHPQIQQQQHNQQQQQKQQQSVSQMHTNSNTNVGSPATAVTTTTATTTTTSAKRANQKSSSRPQGSPSGNQTSAFKTMELTPAPLRKKRNLSENLIPEKVAKIVPESAIYTRLLELEAQIDATLNRKKIDVQEAIKNPHSVRKTLRVYVYNTFLNQTKLDSGKVGGVEEPSWSLRLTGRILEEDSKDSVVGGVSKKGSFSYPKFSAFFKKITVYLDQGFYPDNHVMVWDSARSSAQRDGFEVKRKGDKEFTAVIRLTMNYSPEKFMVSTPLAKVLGIEFDTRPRIMAALWNYVKFKKLQSPNDPSFFMCDASLQKVFGEEKMKFSLASQKISQHLSQPQPIHLEHKIKLSGNSPAGTACYDVQVDVPLPLQKDMSALLTSMESHKEIDAFDEVICTSVKKIHEHLRRRAFLLGYSQSPAEFINALIASQGKDLKLVAGDASHNAEKEQRSEFYNQPWVEDAVIRYLNRKSARTDAP 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02499 555 CDD SWIB_like 346 414 - -
Tsu04g02499 555 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 113 555 - -
Tsu04g02499 555 SUPERFAMILY SWIB/MDM2 domain 334 424 IPR036885 -
Tsu04g02499 555 Gene3D SWIB/MDM2 domain 336 421 IPR036885 -
Tsu04g02499 555 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 113 555 - -
Tsu04g02499 555 Pfam SWIB/MDM2 domain 343 414 IPR003121 -
Tsu04g02499 555 MobiDBLite consensus disorder prediction 1 165 - -
Tsu04g02499 555 SMART swib_2 340 419 IPR019835 -
Tsu04g02499 555 ProSiteProfiles SWIB/MDM2 domain profile. 339 416 IPR003121 -
Tsu04g02499 555 MobiDBLite consensus disorder prediction 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02499 Tsu-Chr4 28244519 28249317 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Tsu04g02499 SWIB 1.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02499 K11650 - gmx:100817271 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02499 04 28244519 28249317 Tsu03g02160 03 23108747 23111195 ECH
Tsu04g02499 04 28244519 28249317 Tsu04g02499 04 28244519 28249317 ECH