Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02160 ATGAATAATgatcaaacaaagaattttgGTGCATCTGCATCATCATCCTTGTTTGGTCGTTTCGGAACATCGCCACAGTCCCAACAACAGCAGCCTAACCTCATGAGCCAACAACATTGGACCCATGTTCTGTCTAGACCACTCCTTCAAACCCAATTTCATGGTCAATTTCAGTTTTCAGAACCACAATCACATTCTCAGGTGTTTTCACAACAAGCTCAATATGCACAATTGCAGTCTCAGGCTGCACATGCTTTGTTACAATCACCGCAATTGCATCCTGTTACTCCTTTGCATAATGCCAGTACCAATACCAATGTTGTATCGACTCCGGTTACCGGAAGCTCCAAACGAGCAACAACTCAAAGGAACTCTTTGCGGACTCCAGGTTCGTCCAGTGGGAACCACAATGTGTTGGATAAGACCATGGAATTGACTCCTGCTTCACGGCGAAGGAAGAGGGAGTTATCAGAGAAGCAGGCGTTGGAGAAAGTGGCTGCAATTCTACCCGAGTCTGCTCTTTATACTCAACTGCTTGATTTTGAAGCTCAGGTGGATTCTGCATTGGCCAAGAGAAAGGTTGATGTGCAGGAGGCTACTAGATGTCCTCCTCATGTTCAGAAAACACTTCGAATTTATGTGTTCAATACGTTCTCGAATCACGCAAAAGCTGACTCTGAGGATAAAACTGCTGAGGAATCTTCTTGGTCTCTGAAGATAATCGGAAGGGTATTGGAAGACGGTAATGATTTTGTGTCTGGAATTTCGCAGAGTTCAACTCCTTCGGACTTGAAGTTCTCTGATTTCTTCAAGAAAATTATCATTTGCTTGGATCAGAATCTTTATCCTGAAAACCATATTATTGTGTGGGACAGTGCTCGTTCGCCTAAACAACATGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTCACTGCAGTGATCAAAATAGATTTGAAATTTTCACCTGAGAAGTTCATGGTTTCAGCACCATTGTCTAAACTTTTAGGGGTTGAGGTCGAGACTCGCCCGAGAATAATAGCCGCTCTTTGGCATTATGTGAAGTCCAGGAGGCTACTGTGTCCGGATGAACCTTCGTTCTTCATCTGTGATCCTTCCCTCCAAAGGGTTTTTGGGGAAGACAAGATGGAATTCACAATGGCTGCTCAGAAGTTGTTAGAGCATATGTCACAACCAAAGCCTATATATTTGGAGCATAACATCAAGCTCTCTGGAGATTGTCCAGCTGGAACTGCATGTTACGATGTACAGGTTGATGTGCCTATTCCACTGCTGAAAGACATGTCTGCATTCTTGTCGAGCAATAGCAGTGAGAATCACAAAGAGATTGATGCGCTTGATGAGATGATTTCCAGTAACCTAAAGAAGATCCAAGAGCATCGTAGAAGACGTGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCAGAGTTTATCAATGCTATGATTGCTTCTCAGAGCAAGGATCTAAAACTTTTTGCCAGAGATGCCAGCCATAATTCTGAAAAGGATCAGCCTTCCGAGTTTTATAATCAACCATGGGTTGAGGATGCTGTCATTCGGTACTTGAACCGCAAAGCTGCTGGAATAGATGCTCACGACGGTAACTAA 1632 0.4295 MNNDQTKNFGASASSSLFGRFGTSPQSQQQQPNLMSQQHWTHVLSRPLLQTQFHGQFQFSEPQSHSQVFSQQAQYAQLQSQAAHALLQSPQLHPVTPLHNASTNTNVVSTPVTGSSKRATTQRNSLRTPGSSSGNHNVLDKTMELTPASRRRKRELSEKQALEKVAAILPESALYTQLLDFEAQVDSALAKRKVDVQEATRCPPHVQKTLRIYVFNTFSNHAKADSEDKTAEESSWSLKIIGRVLEDGNDFVSGISQSSTPSDLKFSDFFKKIIICLDQNLYPENHIIVWDSARSPKQHDGFEVKRKGNKEFTAVIKIDLKFSPEKFMVSAPLSKLLGVEVETRPRIIAALWHYVKSRRLLCPDEPSFFICDPSLQRVFGEDKMEFTMAAQKLLEHMSQPKPIYLEHNIKLSGDCPAGTACYDVQVDVPIPLLKDMSAFLSSNSSENHKEIDALDEMISSNLKKIQEHRRRRAFFLSFSQSPAEFINAMIASQSKDLKLFARDASHNSEKDQPSEFYNQPWVEDAVIRYLNRKAAGIDAHDGN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02160 543 SMART swib_2 323 402 IPR019835 -
Tsu03g02160 543 MobiDBLite consensus disorder prediction 1 36 - -
Tsu03g02160 543 Pfam SWIB/MDM2 domain 326 397 IPR003121 -
Tsu03g02160 543 MobiDBLite consensus disorder prediction 94 142 - -
Tsu03g02160 543 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 90 541 - -
Tsu03g02160 543 CDD SWIB_like 329 397 - -
Tsu03g02160 543 MobiDBLite consensus disorder prediction 94 156 - -
Tsu03g02160 543 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 90 541 - -
Tsu03g02160 543 SUPERFAMILY SWIB/MDM2 domain 321 407 IPR036885 -
Tsu03g02160 543 ProSiteProfiles SWIB/MDM2 domain profile. 322 399 IPR003121 -
Tsu03g02160 543 Gene3D SWIB/MDM2 domain 321 404 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02160 Tsu-Chr3 23108747 23111195 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Tsu03g02160 SWIB 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02160 K11650 - gmx:100802455 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02499 04 28244519 28249317 Tsu03g02160 03 23108747 23111195 ECH
Tsu03g02160 03 23108747 23111195 Tsu03g02160 03 23108747 23111195 ECH