Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02425 ATGACAAACGATTCTCCTTATACTCCTCTTCTCAATAATAATGGGTCCCACAATAACCGTAAGGAGATACTTCTCATCCTTTGTGGATTCTTCTTATTAGCTTCGCTAATTGCGTTTAGTGGCTACAGAGCCTCTAACAACGTAGTAGTTCATGTTCCGAATGCTGACGTGTCATTCTCCGATGAAGTTTCGAAACAAAACACGGTTGTTTCTCGTGGTGTTTCCGCTGGTGTGTCGGAGAAGTCAAATATGTTTCTCTCCGGTAATAAGGTTGGAGAATCTGAATCTTTTCCTTGGAATAATACTATGTTGTCGTGGCAGAGAACAGCTTTTCATTTTCAACCCGAAAAGAATTGGATGAATGATCCTAATGGTCCTATGTACTACAAGGGATGGTACCATTTTTTCTACCAATACAATCCAAACGGCGCAGTTTGGGGCGACATAGTTTGGGGGCACGCTGTATCAAGGGACATGATCCATTGGCTCCACCTTCCGCTAGCAATGGTGGCGGATCAATGGTACGATAGTAATGGTGTTTGGACAGGCTCTGCTACCATCTTACCTGACGGTCAAATCATCATGTTATATACTGGTTCGACCAACGAATCAGTGCAAGTTCAAAACCTTGCATACCCTGCTGATCTCAATGACCCTCTCCTCGTTGATTGGATCAAATACCCTGCCAATCCGGTTCTCGTCCCTCCACCAGGCATTCTTCCCAAGGACTTTCGTGATCCAACAACTGCTTGGCTCACTTCCGAAGGAAAGTGGCGCATCACCATAGGCTCCAAGCTTAACAAAACCGGCATTGCTTTGGTTTATGATACGGTCGATTTCAAGACCTATGAGCGTAAAGAGAATTTGCTTAATGCTGTCCCTGGTACCGGTATGTGGGAGTGTGTGGATTTTTTCCCTGTTTCTAAGAAATCTGAAAATGGTTTGGATACTTCCTTTAAAGGGGATGATGTTAAGCATGTGATGAAGGTGAGTTTGGATGATGATAGACATGATTATTATGCATTGGGGACTTATGATGAGAAGAAGGTTAAGTTTATAGCTGATGATGTTAAAAATGATGTTGGTATTGGATTGAGGTATGATTATGGTATATTCTATGCTTCCAAGACATTTTATGATCAGAAAAAGGATAGGAGAGTGTTGTGGGGTTGGATTGGAGAATCTGATAGCGAATATGCTGATGTCGCCAAAGGTTGGGCTTCAGTTCAGGTATAA 1236 0.4264 MTNDSPYTPLLNNNGSHNNRKEILLILCGFFLLASLIAFSGYRASNNVVVHVPNADVSFSDEVSKQNTVVSRGVSAGVSEKSNMFLSGNKVGESESFPWNNTMLSWQRTAFHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDSNGVWTGSATILPDGQIIMLYTGSTNESVQVQNLAYPADLNDPLLVDWIKYPANPVLVPPPGILPKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTVDFKTYERKENLLNAVPGTGMWECVDFFPVSKKSENGLDTSFKGDDVKHVMKVSLDDDRHDYYALGTYDEKKVKFIADDVKNDVGIGLRYDYGIFYASKTFYDQKKDRRVLWGWIGESDSEYADVAKGWASVQV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02425 411 Pfam Glycosyl hydrolases family 32 N-terminal domain 112 410 IPR013148 -
Tsu04g02425 411 SUPERFAMILY Arabinanase/levansucrase/invertase 105 410 IPR023296 -
Tsu04g02425 411 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 11 410 - -
Tsu04g02425 411 Gene3D Glycosyl hydrolase domain; family 43 116 411 IPR023296 -
Tsu04g02425 411 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 11 410 - -
Tsu04g02425 411 SMART glyco_32 112 411 IPR001362 GO:0004553|GO:0005975
Tsu04g02425 411 Pfam Beta-fructofuranosidase, N-terminal domain 13 104 IPR021792 GO:0004564
Tsu04g02425 411 ProSitePatterns Glycosyl hydrolases family 32 active site. 112 125 IPR018053 GO:0004553|GO:0005975
Tsu04g02425 411 CDD GH32_Fruct1-like 118 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02425 Tsu-Chr4 27264929 27268768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02425 5 410 Glycoside Hydrolase AT1G12240 64.439 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02425 K01193 - gmx:100799487 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02425 04 27264929 27268768 Tsu04g02425 04 27264929 27268768 ECH
Tsu05g00362 05 2697132 2701496 Tsu04g02425 04 27264929 27268768 PCT