Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01666 ATGTCACAGGTGGTTCCGGAGAAAGATTCTCCTTACTCTCCTTACCTAATCAGGAAGAGTCCTTTTCAAGTTGGATATTGTGTGCTATGTCGAAAGAAAGACTACGACTTGGAGTTTGGCCCTTCCACCGTCATGGTGTGGCTCAATTGTCGGACTGAATTCCATGACCAGAGTACGGGACAAACGATTGGAGCCGGGACTGAATCTTGTGGTCTTTACTATCTCCAACCTTCCACTTCTACTATATGTCtatcaaaattaaagaaaatggtGTCTGGTCTTCCTCAGTTAGAGTCCTTACAGTGTGAGTCTTGTCAATTAGGAAAGCATATTCGTGCTTCTTTTTCCAGTCGTATTAATAATAGAGCAATGTCTCCTTTTGATGTTATTCATTCCGATGTTTGGGGTCCTAGTCGTGTTCCTTCTACATTAGGATATAATTGTACTTGTTTTGTTCATGATTTATCCCCAGGTCGTGATAAGATGTCAGCTTGTGCTATCAAATGTGTCTTCCTTGGTTATTCTCGTGTCCAAAAGGGATATCGGTGTTACTCTCCTTCTACACATCGTTTCTACACCTCTGCAGATGTTACATTCTTTGAGGACATACCATACTTTGTCAACTCAAAGGATCCTACACCTGACTTAGATCAGGTTCTTCCTATTCCTTATTTTGAATATGTTGAATCTACTCCTCTGTCATCCGTGTCTCCAGAAGTTCCAGATACATCATCATCAATCGAGTATCCACCACCTTTCAATCGATATGGCATCACCTATGAGAGAAGATTAAACCACATGATTCAGCTCCTGCTCCAAGTGTCTCCATCCTTGCTCCGGCTCCTGATTTGCCCATTGTCATCCGCAAAGGAAGCATTATCCCATTCAGGGTGGAAGCAGGCCATACTTGATGAAATGTCGGCACTAGACTCTAATGGCACTTGGGAGCTTGTCCCACTCCCATCTGGGAAATCTATTGTTGGTTGCAGGTGGTTATTTAATGTTAAGGTGGGCCCTGATGGTCAAATAGATCGATTGAAAGCTCTCCTAGTTGCAAAGGGTTACACTCAAGTTCATGGTCAAGATTATAGTGATACTTTTTCTTCGGTTGCAAAGATGGCATCTGTTCGCCTCTTTTTGGTCATGGCTGCCATGAAACATTGGCCTTTATTTAAGTTGGATATCAAGAATGCATTCTTACATGGTGACTTGGAGGAGGAGATTTACATGGAGCAACCTCCTGGGTTTGTTGCTCAGGGGGAGTGTAACCTCGTATGCAAATTGCGTGATGACAATGAGGGTATCAAGGCGTTAAAACAACACCTATTTCAAAACTTTCAGACTAAGGACTTGGGTCCTCTTCGTTACTTTCTTGGGATTGAGGTAGCTCAATCAAAGTCTGGTATTGCTATCTCTCAAAGGAAGTATGCACTTGATATCTTGGAGGAGACATGCCTTACAGATTACAAATCTATTGATACTCTTATGGACCCTAATATAAAGCTCCTTCCCAATCAGGGGGAGCCCTATTCTGATCCGGGCAGATACCAGAGACTTGTGGGAAAATTAAATTATCTCACCATGACTAGACCTGACATATCTTTTCCAGTCAGTGTAggGATGCAAATGATAGACGGTCTACATCGGGTTATTGTGTTTTCATTGGTTTCATGGAAAAGCAAAAAGCAAATTGTTGTTGCTAGATCGAGTACAGAGGCTGAGTATCGAGCTATGGCTCATGCCACATGCTATACTGGTGTCTGCTTCAGAGGATCCGTTTTTCCGGTTTCTCCTTCCAATGTTACCACTAACAAAAATACCAGGTACTCTTGCTGGAAGCCTACACAAGCAGCTGTGAAATCCACTTTCCACCTCCCAATGCGCAGTTTTGAGATGAAAAATAGGACTTGTACCGAGGACATAAAAAGTCTGAGATTGATAACTGCCATAAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATACGATGCCTTGGTAAATATGCAGATCGAGAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATCGCGCACACAGTCAACTGTTTTGGTGGGAATGTTAAGGTTATTGGAAATACCGGAAGCAACTCGACCAGGGAAGCAATTCATGCCACAGAGCAGGGTTTTGCAGTTGGAATGCATGCTGCCCTTCATATAAACCCTTACTATGGAAAAACCTCCTTGGATGGTATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGGCCTACGATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCACATGTGATTCAAAACTTAGCTCAAAGTACTTGCTTGGCTGGTGTCAAGGAATGTGTTGGAAATGACCGGATCAAAGAGTATACTGATAATAGAATTGTCGTGTGGAGTGGGAACGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAACCTGATTCCTGGTTTAATGCGACAACTCATGTTTGTAGGAAAAAATCCTGCATTGAATTCTAAGCTCTTGCCTTTGATTGACTGGCTTTTTCACATGCCAAATCCCATTGGTTTGAACACGGCTCTAGCTCAACTTGGTGTTGTCAGGCCAGTTTTCAGGCTGCCATTTGTACCTCTCCCTTTGAAGAAAAGGATAGAATTTGTCAATTTGGTGAAGGAAATTGGTCGGGAGCATTTTGTTGGAACCAAAGACGTCCAGGTTCTTGACGACGACGACTTTTTCTTGGTTAGTCGTTATTAA 2832 0.4262 MSQVVPEKDSPYSPYLIRKSPFQVGYCVLCRKKDYDLEFGPSTVMVWLNCRTEFHDQSTGQTIGAGTESCGLYYLQPSTSTICLSKLKKMVSGLPQLESLQCESCQLGKHIRASFSSRINNRAMSPFDVIHSDVWGPSRVPSTLGYNCTCFVHDLSPGRDKMSACAIKCVFLGYSRVQKGYRCYSPSTHRFYTSADVTFFEDIPYFVNSKDPTPDLDQVLPIPYFEYVESTPLSSVSPEVPDTSSSIEYPPPFNRYGITYERRLNHMIQLLLQVSPSLLRLLICPLSSAKEALSHSGWKQAILDEMSALDSNGTWELVPLPSGKSIVGCRWLFNVKVGPDGQIDRLKALLVAKGYTQVHGQDYSDTFSSVAKMASVRLFLVMAAMKHWPLFKLDIKNAFLHGDLEEEIYMEQPPGFVAQGECNLVCKLRDDNEGIKALKQHLFQNFQTKDLGPLRYFLGIEVAQSKSGIAISQRKYALDILEETCLTDYKSIDTLMDPNIKLLPNQGEPYSDPGRYQRLVGKLNYLTMTRPDISFPVSVGMQMIDGLHRVIVFSLVSWKSKKQIVVARSSTEAEYRAMAHATCYTGVCFRGSVFPVSPSNVTTNKNTRYSCWKPTQAAVKSTFHLPMRSFEMKNRTCTEDIKSLRLITAIKTPYLPDGRFDLEAYDALVNMQIENGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGNVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQNLAQSTCLAGVKECVGNDRIKEYTDNRIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMRQLMFVGKNPALNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPLKKRIEFVNLVKEIGREHFVGTKDVQVLDDDDFFLVSRY 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01666 943 PRINTS Dihydrodipicolinate synthase signature 676 697 IPR002220 GO:0016829
Tsu04g01666 943 PRINTS Dihydrodipicolinate synthase signature 767 784 IPR002220 GO:0016829
Tsu04g01666 943 PRINTS Dihydrodipicolinate synthase signature 712 730 IPR002220 GO:0016829
Tsu04g01666 943 PRINTS Dihydrodipicolinate synthase signature 744 760 IPR002220 GO:0016829
Tsu04g01666 943 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 312 435 IPR013103 -
Tsu04g01666 943 Gene3D Aldolase class I 637 943 IPR013785 -
Tsu04g01666 943 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 646 910 IPR005263 GO:0008840|GO:0009089
Tsu04g01666 943 PANTHER DIHYDRODIPICOLINATE SYNTHASE 605 943 IPR002220 GO:0016829
Tsu04g01666 943 SUPERFAMILY Aldolase 646 918 - -
Tsu04g01666 943 Pfam Dihydrodipicolinate synthetase family 644 917 IPR002220 GO:0016829
Tsu04g01666 943 CDD DHDPS 645 915 IPR005263 GO:0008840|GO:0009089
Tsu04g01666 943 SMART DHDPS_2 643 919 IPR002220 GO:0016829
Tsu04g01666 943 ProSitePatterns Dihydrodipicolinate synthase signature 2. 772 802 IPR020625 GO:0016829
Tsu04g01666 943 SUPERFAMILY DNA/RNA polymerases 312 596 IPR043502 -
Tsu04g01666 943 ProSitePatterns Dihydrodipicolinate synthase signature 1. 679 696 IPR020624 GO:0016829
Tsu04g01666 943 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC 605 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01666 Tsu-Chr4 17596945 17607048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01666 273 666 Receptor kinase-like Gene Family AT4G23160 31.599 4.37e-58 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01666 K01714 - gmx:548067 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01666 04 17596945 17607048 Tsu08g01261 08 14110106 14113633 PCT