Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01518 ATGGAAGAAGAAACCCAAGTGATGAAAACGACGACGTATCAAACTGAACCGGGTTCATCCAATAACAGTTTCAGAACCGAGATTGATACTTCTGCTCCATTTGAATCGGTTAAAGAAGCTGTTAACCGTTTCGGTGGTCTTGGTTACTGGAAACCCCTTTTCAATAATAATCATCTTTCATCTCTCACTTCTCATCATTttaagCACCATGTAGAAGAGCTTGATAGTGAGAAACTGGAGGAGCAGACAAGAGTGCTGGAGAAAGAACTGATTCTGAAAGAAAGGGAAACTCTTGATGTGTTGAAAGAATTGGAAAAGACCAAAAGGCTTGCTGAAGATTTGAAATCAAAGTTGCAGAAAGAAGAATCTGATACAAATCTGCATCTTGGGATGAGTGCGTGTGTTCAAAGATCGGTTGTAGATGAGAAAGAAGTGAAGGAATTAAACCAATTGAGTCCGTCTGAGGTTCTTCAACCTATGAAAGAATGTTCGATGGCTTCCCATGTATCTTCTCCAAACTTAATATTAATGGAATTGAAGCAAGCCAAGTTGAACCTAACCAAAACCACTCATGATATTGCCGATGTACGAGCTACTGTTGAATCTCTTAATAAGAAATTAGAGAATGAAAGGATCTCACTTGAGAAAACTCGTGAAAGGTTAAATCAAAATTGTTCAAAAGTGTCTTCTCTTGAAGATGAGCTAAACCAAACCAGATTAAGATTGCAAGTTATTAAAGGTGCTCCTTCAGATGTTAAAATAGAGCTCCATCGATTGAGTTCTGAGGCCGATCATTTcagaaaaatgagagaatccGCAAAATCAGAAGTTTTGGAAACAATGTCTGAGATTGAGATGACAAAAGCTATGATAAAAACTGCAGAAATCAGGTTGGTTGCGGCAACGAAAATGAATGAAGCTTCTAGAGCTGCAGAAGCTGCTACCCTTGCAGATATTAACGCATTGTCTAACCATGATGGTTCACTAGGAGAATGTACGCAGAAGTGCGAAGAAATTAGTCTTTCATTTGAAGAGTATACTACTCTAATCCGTAAAGCTCAAGAAGCAGAAGAACAATCAAAGAATAGAGTAGCAGAAGCTATGCTTGAAGTTGATGAAGCAAATTCATCGCAAATGGATATTTTGAAAAGGGTAGAGGAAGCAGCAGAAGAAGTTAAAACCCGCAAGAAGGCCCTTGAAGAAGCTTTACAAAGGGTTGAAGATGCAGATAGAGGGAAGCTAGAAGTTGAAGAGGCTTTAAGGAAGTGGCGATCTGATGGTCACAAAAGGCGTTCATTGACAAATAGCTGTATGAAGTTTAAAAACTCTGGTCCATCTGATCATAGGAGAGATATTAGGTTACTTGATGTAAATGGATTGAATTTGGTAAACGATGAAGCCAAACCTGTTTTAAAGTCAACTTTATCAATAGGACAAATACTGAGTCAGAAGCTGCTTATGCCGGAAGAGATTGAAGAGGGGATAGTGCAAGGCGAAAGAATCTCGGTGAAACAGAAGGAGTCATTAGGTCAGATGCTTGGCAAAGACAATGATGGTCCGTTGTTTGATGAGCAAGTAGAGAAAGAGAATGGTTATCCATTCACATGGGTAAAAAGTAGAGGTACTCCACACATTATTGAAGAAAGACTAGACCGAGCAATGGCGAATTCTGCCTGGCTGATACTCTTTCCTGATGTCAAATTGATGAACCTTCTTGCCTCTCACTCTGATCATAGTCCTATCTTACTCCAAAATACACCTATGATCAGAAATGGGAGAACTCATTCCTTCCGGTTCGAGAATAGTTGGCTGAAGGAGGAGGATATTGAAGAAGTTGTGGAGGACGGTTGGCACGAGGGGCTTGAtagtgaaattacaaaaaaagtaAATCGGTGTGCAAACAAGCTAGAAGGATGGGGGAGgaggaaaataatgaaattcaaGCAAGAAGTGATCGAATGTAGTGAAGAAATGGAAAGGCTAAGAGGTAACAATGACATGACAAGTTCAGGGAGGTACAAAGAGGTTCAGGAGAAACATGCTAGATTATTAGTCCAAGAGGAGGCCTACTGGAAGCAAAGGGCAAAAATTCATTGGTTGAAAGAAGGTGATCTCAACACAAAGTTTTTCCACATGTCGGCATCTGTCAGAGCTAAATCAAAGAAGATTGATAAACTTGTAAATGAGGCAAATATTGAAGTTACAACTCAGCAGGAAATTTGTGAGGTAGCAAGAAATTATCTTGACCAGTTATTTCAAGCTAATACCAGTTCCCATGACCCGGTTTTATCCCTCATTAGTCCGAGAGTATCCCAAGAAGAAAATGATAGACTTGTAGCGCCTATCACAAAGGTAGAACTAAAAAATGCTTTGTTCCAGATGCAACCGGATAAATCTCCTGGGCCTGACGGTTTTAATCCGGCGTTCTATCAACATTTTTGGAACATATGTGGAGATGGCATATTTGAGGCTACTAAAGAATGGCTAGAGAGGGGGTATTTTCCATCATCCTTGAATGAAACAAATATCTGCTTGGTGCCAAAATGTGAAAATCCTATGTCTATGCAGGAGTTGAGACCGATTTCTCTCTGTAATGTGTTATACAAGATGGTATCTAAGCTACTTGCGAATAGGTTGAAGCCTTTCCTTCGTAAGTGTGTTTCGGAGGAGCAGTCGGCTTTTGTGGAGGGAAGATCAATATCGGATAATGCGTTGATTGCTATTGAGGTCATTCATGCTTTGAAGAGAAGGACAAAAGGGACAAGGGGAGAACTTGCACTCAAAGTCGATATCAGTAAGGCTTATGATAAGGTTGATTGGGGTTTCTTACGAGGTATGCTTGAGAGAATGGGTTTTACACATAAGTGGATACACTGGATGATGTTATGTGTCAGTTCAGTAAATTACTCAGTTTTGGTGAACTTTGAAAAAGTTGGTCCTATCTTTCCTGGGAGGGGCCTAAGGCAAGACGATCCACTGTCTCCTTACCTTTTTATCTTGGTCACAGAAGGCTTAACTACTCTTATAAAGAACTCAGTTGCTCGAGGAGATTTACAAGGTGTGAAGATATGCAGAGGGGCACCTTTGGTGTCCCACCTCCTTTTCGCTGATGACTGTTTCTTATTTTGCAGGTCAACTCTAGAAGAAACAAATCACTTGATGAGTATTCTCAAAACATATGAAGATGCTTCAGGCCAAGAAATCAATATGGCGAAATCGGAAGTGTTTTTTAGTCGAAACATAAACATGGCAGCCCAAGAAGATCTTTCACGAATCATGGGAGTCAGACACGTGCTTGGAACTGGTACCTACCTTGGCTTACCATCTATGATTggtagaaagaaaaaagagactTTTGCTTATGTGAAGGATCGAATTTGGAAGCGCATCAACTCTTGGAGAGGAAGGGCATTGTCTAGAGCGGGAAAAGAGGTAATGATCAAGTCGGTATTGCAAGCCATTCCGTCTTATGTCATGAGTATCTACCTTTTACCAGAATCCACAATCAAGGAAATTGAGCGGATGATCAACTCTTTTTGGTGGGGAGGAGGGCCAAATAACAAGGGTATTAGATGGTTGCTAAACAAGGATGGAAATTATGACAAAGCCGCATACACTAGTATCAAAAATCTACAAGGCGAGGTACTTTCCAAATTCCTCTCTCTCTTTGATTCTCATCTTGGCAATAACCCAAGTTATGCATGGCGTAGCATTTGGAATTCCCGTCAAGTTCTTATGAATGGATGTAGGTGGAGTATAGGCATGGGAACCAATATCAATGTCATGAATGATCCTTGGCCAAGAGAGAAGGATGGGGTATGGATGAAATCACCACAAACTCAAGGTGCATATCATATTAGTGTAAACCATCTCATGATTCCTAATAGGAAAAAGTGGGATAAGGAAAAAATTGAATCTTTATTTCCTGTGGAAGTTGCTAGTTGTATTCTAAATATTCCGTTATTTGATGCGATAAAGGAGGATAAACTAGTTTGGAATGATGATATACATGGTGAATATAATGTTAAGAGTGGCTATAATATTATGATTCAATGTATAGGGAGGGGTGAAAATGTGGTGACAGCCCATGAAGATTGGAATTGTCTATGGAAGGTACATGCCCCTCCAAAGGCAAAAAACTTACTTTGGCGGATATGTCGAGGGTGTTTACCAACCCGTGATCATTTGCAAGAGAGTGTTGTTGCTCGACAGTCTGCTGGTCTTGATCATGTCATTTCATCGCGGCTTCAACACATTAATACGGCGAAGGAATTGATCATGCATATCTGCAAGTTTGAAGATAAAGAAGTGGCAGCTAGTACTTCTCTTACTGGTTCAAACACTAGTAAAGCTTCTTCTAATTCTATAAGAGATTTTAGCTTCCTtaagtattttaaaattgaaatccATCAGCCCAAACAAACCTATCTCAGAGAAGTTTGTTGGCAGCCACCTGGGGTGAATTGGTTGAAATGTAATATTGATGGTGCTTCCAATGGTAACCCTGGTTTATCATCTTGTGGAGGTATTTTTCGAAATTCATCTTCTGACTTTGTGTATGGATTTGCTGAACCTCTTGGTGTTGCCACTTCTTTTTATGCTGAACTTTGTGGAGCAATGAGAGCTATTGATCTTGCCTTTCAATTCCATTGGCATAATGTTTGGTTAGAGACTGATTCAGTTTTGGTTGTTTCTGCTTCCTTGGCAGTTAAGAAATCGATGGAAAAATGCTATTCACAAGGCCAAATCCATGAATGTTATTATATCACACATCTTTAG 4779 0.3923 MEEETQVMKTTTYQTEPGSSNNSFRTEIDTSAPFESVKEAVNRFGGLGYWKPLFNNNHLSSLTSHHFKHHVEELDSEKLEEQTRVLEKELILKERETLDVLKELEKTKRLAEDLKSKLQKEESDTNLHLGMSACVQRSVVDEKEVKELNQLSPSEVLQPMKECSMASHVSSPNLILMELKQAKLNLTKTTHDIADVRATVESLNKKLENERISLEKTRERLNQNCSKVSSLEDELNQTRLRLQVIKGAPSDVKIELHRLSSEADHFRKMRESAKSEVLETMSEIEMTKAMIKTAEIRLVAATKMNEASRAAEAATLADINALSNHDGSLGECTQKCEEISLSFEEYTTLIRKAQEAEEQSKNRVAEAMLEVDEANSSQMDILKRVEEAAEEVKTRKKALEEALQRVEDADRGKLEVEEALRKWRSDGHKRRSLTNSCMKFKNSGPSDHRRDIRLLDVNGLNLVNDEAKPVLKSTLSIGQILSQKLLMPEEIEEGIVQGERISVKQKESLGQMLGKDNDGPLFDEQVEKENGYPFTWVKSRGTPHIIEERLDRAMANSAWLILFPDVKLMNLLASHSDHSPILLQNTPMIRNGRTHSFRFENSWLKEEDIEEVVEDGWHEGLDSEITKKVNRCANKLEGWGRRKIMKFKQEVIECSEEMERLRGNNDMTSSGRYKEVQEKHARLLVQEEAYWKQRAKIHWLKEGDLNTKFFHMSASVRAKSKKIDKLVNEANIEVTTQQEICEVARNYLDQLFQANTSSHDPVLSLISPRVSQEENDRLVAPITKVELKNALFQMQPDKSPGPDGFNPAFYQHFWNICGDGIFEATKEWLERGYFPSSLNETNICLVPKCENPMSMQELRPISLCNVLYKMVSKLLANRLKPFLRKCVSEEQSAFVEGRSISDNALIAIEVIHALKRRTKGTRGELALKVDISKAYDKVDWGFLRGMLERMGFTHKWIHWMMLCVSSVNYSVLVNFEKVGPIFPGRGLRQDDPLSPYLFILVTEGLTTLIKNSVARGDLQGVKICRGAPLVSHLLFADDCFLFCRSTLEETNHLMSILKTYEDASGQEINMAKSEVFFSRNINMAAQEDLSRIMGVRHVLGTGTYLGLPSMIGRKKKETFAYVKDRIWKRINSWRGRALSRAGKEVMIKSVLQAIPSYVMSIYLLPESTIKEIERMINSFWWGGGPNNKGIRWLLNKDGNYDKAAYTSIKNLQGEVLSKFLSLFDSHLGNNPSYAWRSIWNSRQVLMNGCRWSIGMGTNINVMNDPWPREKDGVWMKSPQTQGAYHISVNHLMIPNRKKWDKEKIESLFPVEVASCILNIPLFDAIKEDKLVWNDDIHGEYNVKSGYNIMIQCIGRGENVVTAHEDWNCLWKVHAPPKAKNLLWRICRGCLPTRDHLQESVVARQSAGLDHVISSRLQHINTAKELIMHICKFEDKEVAASTSLTGSNTSKASSNSIRDFSFLKYFKIEIHQPKQTYLREVCWQPPGVNWLKCNIDGASNGNPGLSSCGGIFRNSSSDFVYGFAEPLGVATSFYAELCGAMRAIDLAFQFHWHNVWLETDSVLVVSASLAVKKSMEKCYSQGQIHECYYITHL 1592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01518 1592 Coils Coil 644 664 - -
Tsu04g01518 1592 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 4 525 - -
Tsu04g01518 1592 CDD RNase_H_like 1492 1566 IPR044730 -
Tsu04g01518 1592 Coils Coil 382 419 - -
Tsu04g01518 1592 Coils Coil 193 234 - -
Tsu04g01518 1592 Coils Coil 76 96 - -
Tsu04g01518 1592 Pfam Reverse transcriptase-like 1493 1566 IPR002156 GO:0003676|GO:0004523
Tsu04g01518 1592 Gene3D - 1489 1585 IPR036397 GO:0003676
Tsu04g01518 1592 Coils Coil 350 370 - -
Tsu04g01518 1592 SUPERFAMILY Ribonuclease H-like 1488 1572 IPR012337 -
Tsu04g01518 1592 CDD RT_nLTR_like 840 1108 - -
Tsu04g01518 1592 Gene3D - 174 340 - -
Tsu04g01518 1592 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 827 1097 IPR000477 -
Tsu04g01518 1592 MobiDBLite consensus disorder prediction 7 26 - -
Tsu04g01518 1592 Pfam zinc-binding in reverse transcriptase 1340 1402 IPR026960 -
Tsu04g01518 1592 MobiDBLite consensus disorder prediction 1 26 - -
Tsu04g01518 1592 Coils Coil 101 124 - -
Tsu04g01518 1592 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 855 1078 IPR000477 -
Tsu04g01518 1592 PANTHER MYOSIN HEAVY CHAIN-LIKE 4 525 - -
Tsu04g01518 1592 Pfam Weak chloroplast movement under blue light 150 430 IPR008545 -
Tsu04g01518 1592 Pfam Weak chloroplast movement under blue light 26 124 IPR008545 -
Tsu04g01518 1592 SUPERFAMILY DNA/RNA polymerases 781 1080 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01518 Tsu-Chr4 15907806 15922033 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01518 - - vri:117922369 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01518 04 15907806 15922033 Tsu04g01518 04 15907806 15922033 ECH
Tsu04g01518 04 15907806 15922033 Tsu06g00760 06 6773529 6781263 PCT