Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01421 ATGCAGCACAACATCCTGACTTCGATCCGTAGCACGAAAATCACGGATGGTTGTAAAGCCACTCAAGTCTACGCTCTTAACTCCTCCGCCGGCGCCGATTCTCCGATCAACGCCGGCGGTGGAGAATCCATCGGAGATAAATTCTTTCATCATTTACTAGACCGGTCTAAACAATCAGGTCGAATCAAACCGGTTGGTACAAAAACGGCGACACGCGACGTCGTTTTGGAGGGTCTCCTCCCTTGCGGCCTTCCTTCATCGGAGCTTCTAGAACCTTCGATCGAGCTTTGCTTGAAGCCTATTGATTTGGTTGAAACCCTCTCCGGCGTGCATCGCCGGATCGAGAGTTCCGGTGAGGATGGGAAATTTGAGGCGTTTTTGGAGCAGTGTTTGGTGTTTAAGGGATTTCCTGATACTAAATTGTTCCGGCGGAGTCTCCGGTTGGCGCGGCAGCATGCCGTGGATGTTCACTCGAAGATTGTGTTGGCGTCGTGGTTGAGGTATGAGAGGAGAGAGGATGAATTTGTTGGATCTTCAGCAATGGATTGTTGTGGAAGAAACCTTGAATGTCCTAAGGCTAGTTTGGTCACAGGGTATGATCCTGAATCtggttttgataattgttggtgTTTTCGAAAAGATAATATTATTGTTGACAATGATGGTGGGGAAATTGAATGCTCAACTTCTTATGGAGATGAGGATGATGGTAGTGGTAGTGGTGATGGTGGTTGCCATGATATGTCTTTTTGTATAGGTGATAGTGATATTAGGTGTAATCGATACTCTATAGCATCACTTTCGAAGCCTTTTATGGCAATGTTGTATGGTGGATTTGTTGAGTCTAGGAGGGAGAAGGTAAATTTCTCCCTGAATGGTGTATCTGTTGATGTGATGATGGCTGTTGAGGTTTTTAGTAGAACCAAGAGGTTGAGTCTATTTGCAAATAATGTTGTTGTAGAGATGCTTTCTTTTGCGAATAGGTTTTGTTGCGAGGAGATGAAATCTGCTTGTGATGCTCATTTGGCTTCTTTGGTATTTGACATGGATGATGCATTGTTGTTGATTGAGTATGGACTGGAGGAGAACGCGTATCTACTCGTGGCAGCTTGCTTGCAAGTGTTTCTGAGAGAGCTTCCTAGTTCGATGCACAGTTTGAGTGTTTCGAAATTGTTTTGTAGTGTAGAGGGTAGAGATAGATTGGCCTTGGTAGGGCATGTTTCGTTTTCGTTGTATTGTTTTTTGAGTCAGGTTGCAATGGAGGAAGATATGAAATCCAACACGACTGTGATGCTCTTAGAGAGGTTAGGAGAGTGTGCGGCGAGTGGTTGGCAGAAGCAACTTGCTTATCACCAATTAGGTGTTGTGATGCTTGAGAGAAAAGAATACAAAGATGCACAACAGTGGTTTGAGGCTGCTGTTAAGGAAGGACATATTTATTCTTCAGTGGGTGTTGCAAGGGCCAAATATAAACGCGGTCACACATATTCAGCATACAAGATGATAAACTCCCTTATTTCGGATCATAAACCCGTTGGTTGGATGTATCAGGAAAGGGCTTTATATTGCATTGGGAAGGAAAAAACGATGGACTTGGTCTCTGCAACTGAATTAGATCCAACTCTTTCATTTCCATACAAACACCGAGCTGTTTTTTTGGTAGAGGAGAGTAAGATTGAAGCTGCCATTTctgaaatcaataaaataattggtTTCAAGATTTCTACTGACTGCCTTGAATTGAGAGCTTGGTTCTTGATTGCCATGAAGGATTATGAAGGAGCCCTCAGGGATGTTAGGGCAATTTTGACATTGGATCCAAATTATAAGATGTTCTATGGGAAAATGCAAGGCGATCGCTTGGTAGAACTCCTCCGCCCTGTTGCTCAGCAGTGGAACCAGGCTGATTGCTGGATACAATTGTACGACAATTGGTCTTCCGTTGACGATATTGGTTCTTTGGCTGTTGTACACCAGATGTTGGAGAATAACCCAGGGACAAGCATTTTACGCTTTCGGCAATCTCTACTCCTTTTAAGGTTAAATTGTCAAAAGGTAGCCATGCGTAGTTTGCGTCTGGCTAGAAATCATTCTTCTTCAGCACATGAAAGACTTATCTATGAAGGATGGATATTGTATGACACTGGTCATCGTGAAGAAGCTATAGCAAAGGCTGATGAGTCAATTTCTATTCAAAGGTCATTTGAAGCTTTCTTTCTAAAAGCTTATGCATTGGCTGATTCATGTCTTGATTCCGAGTCTTCAAAGAATGTGATTGATCTCTTGGAGGAAGCTCTTAGATGCCCTTCAGATGGTCTTCGGAAGGGACAAGCACTAAATAATTTAGGGAGTATATATGTTGATTGTGAAAAGCTAGACCTTGCTGCTGACTGCTACAAGCACGCACTTAACATCAAGCATACACGAGCACATCAGGGGTTGGCACGTGTATACCATCTTCAAAATCAGCCCAAAGCGGCATACGATGAGATGACAAAGCTAATAGAAAAGGCCAAGAATAATGCATCAGCTTATGAGAAGCGGTCAGAATATTGTGATCGTGACATGGCAAAGGGAGATCTTAGTTTGGCAACACAGTTGGATCCTTTAAGGACATATCCATATAGATATAGGGCGGCAGGTAATTTTGATACAACTAGTTACTCCTCATTTACTTGTTTATGTACCCTAAGtcaatttgtttga 2706 0.4228 MQHNILTSIRSTKITDGCKATQVYALNSSAGADSPINAGGGESIGDKFFHHLLDRSKQSGRIKPVGTKTATRDVVLEGLLPCGLPSSELLEPSIELCLKPIDLVETLSGVHRRIESSGEDGKFEAFLEQCLVFKGFPDTKLFRRSLRLARQHAVDVHSKIVLASWLRYERREDEFVGSSAMDCCGRNLECPKASLVTGYDPESGFDNCWCFRKDNIIVDNDGGEIECSTSYGDEDDGSGSGDGGCHDMSFCIGDSDIRCNRYSIASLSKPFMAMLYGGFVESRREKVNFSLNGVSVDVMMAVEVFSRTKRLSLFANNVVVEMLSFANRFCCEEMKSACDAHLASLVFDMDDALLLIEYGLEENAYLLVAACLQVFLRELPSSMHSLSVSKLFCSVEGRDRLALVGHVSFSLYCFLSQVAMEEDMKSNTTVMLLERLGECAASGWQKQLAYHQLGVVMLERKEYKDAQQWFEAAVKEGHIYSSVGVARAKYKRGHTYSAYKMINSLISDHKPVGWMYQERALYCIGKEKTMDLVSATELDPTLSFPYKHRAVFLVEESKIEAAISEINKIIGFKISTDCLELRAWFLIAMKDYEGALRDVRAILTLDPNYKMFYGKMQGDRLVELLRPVAQQWNQADCWIQLYDNWSSVDDIGSLAVVHQMLENNPGTSILRFRQSLLLLRLNCQKVAMRSLRLARNHSSSAHERLIYEGWILYDTGHREEAIAKADESISIQRSFEAFFLKAYALADSCLDSESSKNVIDLLEEALRCPSDGLRKGQALNNLGSIYVDCEKLDLAADCYKHALNIKHTRAHQGLARVYHLQNQPKAAYDEMTKLIEKAKNNASAYEKRSEYCDRDMAKGDLSLATQLDPLRTYPYRYRAAGNFDTTSYSSFTCLCTLSQFV 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01421 901 SUPERFAMILY TPR-like 448 734 IPR011990 GO:0005515
Tsu04g01421 901 SMART tpr_5 702 735 IPR019734 GO:0005515
Tsu04g01421 901 SMART tpr_5 776 809 IPR019734 GO:0005515
Tsu04g01421 901 SMART tpr_5 576 609 IPR019734 GO:0005515
Tsu04g01421 901 Pfam Tetratricopeptide repeat 777 805 IPR019734 GO:0005515
Tsu04g01421 901 PANTHER ETHYLENE-OVERPRODUCTION PROTEIN 1 1 884 - -
Tsu04g01421 901 Coils Coil 828 848 - -
Tsu04g01421 901 Gene3D Tetratricopeptide repeat domain 652 889 IPR011990 GO:0005515
Tsu04g01421 901 ProSiteProfiles TPR repeat profile. 776 809 IPR019734 GO:0005515
Tsu04g01421 901 PANTHER ETO1-RELATED 1 884 IPR044631 GO:0010105
Tsu04g01421 901 SUPERFAMILY POZ domain 243 343 IPR011333 -
Tsu04g01421 901 Gene3D Tetratricopeptide repeat domain 433 615 IPR011990 GO:0005515
Tsu04g01421 901 SUPERFAMILY TPR-like 704 880 IPR011990 GO:0005515
Tsu04g01421 901 Gene3D Potassium Channel Kv1.1; Chain A 240 385 IPR011333 -
Tsu04g01421 901 SMART BTB_4 246 346 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01421 Tsu-Chr4 14639038 14644248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01421 - - rcu:8278935 1281.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01421 04 14639038 14644248 Tsu04g01421 04 14639038 14644248 ECH
Tsu04g01421 04 14639038 14644248 Tsu06g00344 06 2841526 2846776 PCT