Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01329 atgaatatgAATTCTACTACTCTCTCTATAAATCCTTCTCTCccttcttcatcatcatgttcttcCTACCCTTCTATTACTTCTCttaaatttcaacttttttcaCCATTCGGATCAAAACCCATTTCTTATTCTTGTAAAAAAGCACGCTTGTGCTTTTTTCAAGGGTCAGAAACTATGAAGGGTAGAAAAAGTTTGGTGCTTGAAGCTACAAAAATGGATAAAACAGAGTTTGATAGTCTTGCGGAAGAGGATAAGGGAGAGGGTACTTCTTCTTCTACTTTGGTTGATTCTGAAAATGAGACGAATTCGAGGCCGAGAAGAATTGCTCTTTTTGTTGAGCCTTCTCCATTTGCATATGTCTCAGGATACAAAAACCGGTTTCAGAATTTTATCAAATGCCTTCGTGAAATGGGTGATGAGGTGATGGTTGTGACAACACATAAAGGAGTGCCCCAAGAATTTCATGGAGCCAAAGTAATAGGATCTTGGAGCTTTCCCCTCCCTTGGTATCAGAACGTACCCCTCTCTTTGGCACTTAGTCCAAGAATCATTTCAGAGGTTGCTCGGTTCAAGCCTGACATAATACATGCATCATCACCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAACTTTTGTGTGTTCCAATTGTCATGTCCTATCATACCCATGTACCAGTGTACATTCCAAGATATACCTTTAGTTGGCTGGTGAAACCCATGTGGTTGGTCATAAAATTTCTTCACAGAGCAGCTGACCTGACTCTGGTGCCATCTGTTGCCATTGGGAGGGATCTTCAAGCGGCTAGAGTAACAGCTGCTAACAAGATTCGTCTTTGGAACAAAGGTGTTGATTCTGATAGTTTCCATCCTCGATACCGTTCGCATGAAATGAGATTAAGACTAAGCAATGGTGAACCTGAGAAGCCTTTAATAGTTCATGTTGGACGGCTTGGAGTTGAAAAGAGTTTAGATTTTCTCAAAGGACTCATGGATAAGCTTCCTGAAGCTCGAATTGCTTTCGTCGGAGATGGACCGTACAGGGAGGAGCtggagaaaatgtttgaaggtATGCCTGTGGTATTCACAGGAATGTTACTAGGGGAAGAACTCTCTCAAGCATATGCTAGTGGAGATGTATTTGTCATGCCTTCAGAGTCAGAGACACTTGGATTTGTTGTTTTGGAGGCCATGTCTTCAGGGATACCTGTGGTCGGAGCACGCGCGGGAGGCATTCCAGATATAATCCCTGCGGATCAAGAAGGTAAAACCGGCTACCTCTATAATCCAGGCAATCTTGACGACTGTTTGAGTAAATTGAAACCCcttttgttcaacaaagagttgAGAGAAACCATTGGAAAGGCTGCACGTAATGAGATGGAGAAATTTGATTGGAAGGCAGCCACGCGAAAGGTTCGCAATGAACAATACAATGCTGCCATTTGGTTCTGGCGCAAGAAAAGGGCGATACTATTTAGACCCTTGCAATGGATTGCTAAACGTGTTTTCCCATCACCACAAGTTAACTATAGATGA 1545 0.4039 MNMNSTTLSINPSLPSSSSCSSYPSITSLKFQLFSPFGSKPISYSCKKARLCFFQGSETMKGRKSLVLEATKMDKTEFDSLAEEDKGEGTSSSTLVDSENETNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKCLREMGDEVMVVTTHKGVPQEFHGAKVIGSWSFPLPWYQNVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGRDLQAARVTAANKIRLWNKGVDSDSFHPRYRSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKGLMDKLPEARIAFVGDGPYREELEKMFEGMPVVFTGMLLGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGIPVVGARAGGIPDIIPADQEGKTGYLYNPGNLDDCLSKLKPLLFNKELRETIGKAARNEMEKFDWKAATRKVRNEQYNAAIWFWRKKRAILFRPLQWIAKRVFPSPQVNYR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01329 514 Gene3D Glycogen Phosphorylase B; 123 470 - -
Tsu04g01329 514 CDD GT4-like 108 480 - -
Tsu04g01329 514 MobiDBLite consensus disorder prediction 78 102 - -
Tsu04g01329 514 PANTHER GROUP 1 FAMILY GLYCOSYLTRANSFERASE 16 513 - -
Tsu04g01329 514 Pfam Glycosyltransferase Family 4 126 289 IPR028098 -
Tsu04g01329 514 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 109 476 - -
Tsu04g01329 514 Gene3D Glycogen Phosphorylase B; 286 466 - -
Tsu04g01329 514 Pfam Glycosyl transferases group 1 309 461 IPR001296 GO:0016757
Tsu04g01329 514 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 16 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01329 Tsu-Chr4 13475250 13480572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01329 28 422 Glycosyltransferase AT5G01220 71.930 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01329 K06119 - gmx:100807850 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01329 04 13475250 13480572 Tsu04g01329 04 13475250 13480572 ECH
Tsu04g01329 04 13475250 13480572 Tsu06g00362 06 3069013 3073653 PCT