Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01245 ATGGATACTACTTCCACCAAACAacaactaaaacaaaaacaaacccaACAACAACATCTCAAACACTATACCCCATTGTTAAGCCTCACAAGGTCCACAAATTCAAACCCTTTTTCCATTTTAGTCATTTGGGTTTCCAAATCTCTCAAAAGTTTGTGTTTTAGAGTTCATTTCTCAAATGGGTTTTGCTTAAAAAGCATTCAATATCATGGTATGGTGATTAACACTAACACTAACACCCCTGTAATCTATGTTCCATCTTGTTCTACAATGGAGGATTTGACTGAGAAGAAAGAAGTTGTTGAAGAAAATGTTGGTTGTGACAATGGTGTTGGTAAAAGAGGAATCTTTTCtgatttgattgaagaaaagGGTTGTTGTGAAAGTAGTTCAAGTTCTGAGTTTTTGTCATCTGAGAATATTGGTAATGAAGAACAACATAGTCAGAGTAGTACTGAGGAAGGTTCATCTTCACCACTTTCATTGGGTTGGAATGTTCAGAAGATTTCTGTTTCAGATTGTAGTAGTCCTCATGGAAGTGAAGATAGTAAGAAGAAACATTTGGTGGAAAAGGAATTTGTGAAACAAGTTTCAGCATTAACAGAGATTGAGATGATGAAAGAGAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGTGGAAATGGGGTCCCTACAGCATTGGCTATCTCAAATGCTATAACTAATCTATGTGctACACTCTTTGGACAACTTTGGAGATTAGAGCCTCTGCGGTCCGAGAAGAAAGCAATGTGGCGAAGAGAGATGGAGTGGTTTCTTTCAGTCAGTGATCATATTGTCGAATTAACACCTAATTGGCAGACTTTTCCTGATGGAAGCAAGCTTGAGGTCATGACTTGTCGACCACGCTCGGATCTGTATGTCAATCTTCCAGCTCTGCGAAAATTAGATAACATGCTTCTCGAAATTCAAGATAGTTTTGTTGATACCGAGTTCTGGTATGTAGATCAAGGTGTTATAGCTCCAGATGCTGGTACTAGTCCATCGTCTTTTAGGCAAGCACTACAGCGACAAGAAGACAAATGGTGGCTTCCGGTTCCCCGAGTCCCTCCTTGTGGCCTCCACGAAAAGTCAAGAAAGCAATTGCAGCACAAGCGTGATTGCACGAGCCAAATATTAAAAGCTGCAATGGCTATTAATAGTATTACTTTAGCTGAAATGGACATTCCCGAGTCTTATTTAGAGTCTCTTCCAAAGAATGCTAGAGTTAGCTTGGGGGATGTTATTCATCGATACATCACGTCAGATCATTTTTCTCCTGAGTGTTTGCTAGATTGCCTCGATTTATCTTCTGAACATCAAGCTATAGAGATCGCAAACCGAGCAGAGGCTTCCATGTATATTTGGCGTAAAAAGACTAATTCAAAGCCTGCTAGTGTTAGTGGCAGATCAAGTTCAAGAACATCATGGGAAATGGTCAAGGATCTAATGGTTGATGCCGACAAAAGGGAATTGTTTGCAGAGAGAGCCGAAATTCTTCTGCTTTCTTTAAAGCAGCGTTTTCCCGGTCTCCCTCAAACAGCCTTGGATATGAGCAAAATTCAATACAACAAGGATGTTGGAAAAGCCATTTTAGAGAGCTACTCTCGAGTACTCGAAAGTTTAGCATTTAACATGGTATCGCGAATTGACGACGTGCTCTACGTAGACGACTTGACAAAAAACTCTGATCAATTCCCGTCTCATCCAAAAGTCGGTGTAATTACTCGCAAGAGTATATCAGTTCCATACGCAATGCCGGCTCCAACGACTCCATACAAATCAGCTTTCGGAACGCCGACACTCTCTCCCGCACATGTAATTAGCCCTTCAAAGGGAGGAAAATCTCCACTCATCAATAATGGCAACAAAACTCCTCAGAGAGGTGTAGGGGCGAAGAAATCTTTGACCGATTTTCTTAGCATTGATGTAAAAGGGAGCAGTTCAAATGAGAAAACAGTTTCAGAATCAAAAACAGTTGATGAAGTGGCAGCATTTGATTCCAGTGATGTTAGAGAAGTTGCTGTTAGCCCAAATATTATGGACAAGGCATGGCAAGTTTGA 2091 0.3974 MDTTSTKQQLKQKQTQQQHLKHYTPLLSLTRSTNSNPFSILVIWVSKSLKSLCFRVHFSNGFCLKSIQYHGMVINTNTNTPVIYVPSCSTMEDLTEKKEVVEENVGCDNGVGKRGIFSDLIEEKGCCESSSSSEFLSSENIGNEEQHSQSSTEEGSSSPLSLGWNVQKISVSDCSSPHGSEDSKKKHLVEKEFVKQVSALTEIEMMKERFAKLLLGEDMSGCGNGVPTALAISNAITNLCATLFGQLWRLEPLRSEKKAMWRREMEWFLSVSDHIVELTPNWQTFPDGSKLEVMTCRPRSDLYVNLPALRKLDNMLLEIQDSFVDTEFWYVDQGVIAPDAGTSPSSFRQALQRQEDKWWLPVPRVPPCGLHEKSRKQLQHKRDCTSQILKAAMAINSITLAEMDIPESYLESLPKNARVSLGDVIHRYITSDHFSPECLLDCLDLSSEHQAIEIANRAEASMYIWRKKTNSKPASVSGRSSSRTSWEMVKDLMVDADKRELFAERAEILLLSLKQRFPGLPQTALDMSKIQYNKDVGKAILESYSRVLESLAFNMVSRIDDVLYVDDLTKNSDQFPSHPKVGVITRKSISVPYAMPAPTTPYKSAFGTPTLSPAHVISPSKGGKSPLINNGNKTPQRGVGAKKSLTDFLSIDVKGSSSNEKTVSESKTVDEVAAFDSSDVREVAVSPNIMDKAWQV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01245 696 MobiDBLite consensus disorder prediction 623 639 - -
Tsu04g01245 696 MobiDBLite consensus disorder prediction 619 640 - -
Tsu04g01245 696 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 202 570 IPR005512 GO:0005085
Tsu04g01245 696 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 7 139 662 - -
Tsu04g01245 696 MobiDBLite consensus disorder prediction 133 160 - -
Tsu04g01245 696 ProSiteProfiles PRONE domain profile. 193 576 IPR005512 GO:0005085
Tsu04g01245 696 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 139 662 IPR038937 GO:0005085
Tsu04g01245 696 Gene3D PRONE domain, subdomain 1 435 575 - -
Tsu04g01245 696 Gene3D PRONE domain, subdomain 1 193 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01245 Tsu-Chr4 12574080 12577500 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01245 - - gmx:100800673 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01245 04 12574080 12577500 Tsu04g01245 04 12574080 12577500 ECH
Tsu04g01245 04 12574080 12577500 Tsu06g00523 06 4407918 4410896 PCT