Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00615 ATGGACAAGGTAAGCCAATATGAACGTGTGTTCAAACGgtttgatgaaaatggagatggtAAGATATCGCCGGCTGAGCTACGACAATGCATTGAGGCCATCGGTGATGAGAAGTTATCAGAGAAGGATGCAGAGGCGGCAGTGACAATTTTGGATTCGGACGGGGATGGATTGGTGGGGTTTGATGATTTTGTGAAGTTTGTGGAGGGAGTAAAAGAGGAAGATAAAGTGAATGACTTGAAAGAGGCTTTTAAGTTGTATGATATGGATGGAAGTGGTTGCATCACACCAAGGAGTCTTAAGAGAATGCTTAGTAGGTTAGGTGATTCAAGAAGCATAAATGAGTGTCAACTTATGATCTCTAAGTTTGATCTTGATGGGGATGGGAAAATCAGTTTTGATGAATTTAGGGTCATGATGTTGTAA 426 0.3944 MDKVSQYERVFKRFDENGDGKISPAELRQCIEAIGDEKLSEKDAEAAVTILDSDGDGLVGFDDFVKFVEGVKEEDKVNDLKEAFKLYDMDGSGCITPRSLKRMLSRLGDSRSINECQLMISKFDLDGDGKISFDEFRVMML 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00615 141 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Tsu04g00615 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Tsu04g00615 141 Gene3D - 73 141 - -
Tsu04g00615 141 Pfam EF-hand domain pair 78 140 IPR002048 GO:0005509
Tsu04g00615 141 Pfam EF-hand domain pair 7 68 IPR002048 GO:0005509
Tsu04g00615 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 141 - -
Tsu04g00615 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Tsu04g00615 141 Gene3D - 1 72 - -
Tsu04g00615 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 141 - -
Tsu04g00615 141 SMART efh_1 43 71 IPR002048 GO:0005509
Tsu04g00615 141 SMART efh_1 115 141 IPR002048 GO:0005509
Tsu04g00615 141 SMART efh_1 79 107 IPR002048 GO:0005509
Tsu04g00615 141 SMART efh_1 6 34 IPR002048 GO:0005509
Tsu04g00615 141 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Tsu04g00615 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
Tsu04g00615 141 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Tsu04g00615 141 CDD EFh 79 140 IPR002048 GO:0005509
Tsu04g00615 141 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Tsu04g00615 141 SUPERFAMILY EF-hand 4 141 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00615 Tsu-Chr4 5719538 5719963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00615 2 140 EF-hand Containing Proteins AT1G76650 49.640 9.23e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00615 K13448 - gmx:100783575 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00615 04 5719538 5719963 Tsu03g03029 03 41595492 41595920 PCT