Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03029 ATGGTCATAGACAAAGTGACTCAATATGTACGTGTATTCAATCACTTTGATGGAAATGGAGATGGAAAAATATCATCGTCGGAGCTGCGGCAATGCGTGGAGGCAATCGGGGGCAAGATGTCGAACGAGGAGGCAGAAGTGGCAGTGGAGCTTCTCGACTCGGACGGGGATGGATTAGTTGGGTTGgatgattttgtgagatttgtaGAGGGAGGAAAAGAGGAAGAGAAAGTGAATGACTTGAGAGAGGCTTTTAAGATGTATGAAATGGAGGGGTTTGGTTGTATCACACCAAAGAGTTTAAAGAGAATGCTTGGAAGATTGGGTGAATGTAGAAGTGTTGATGAATGTCAAGCTATGATTGCTAAATTTGATATTGATGGAGATGGGATGCTTAGTTTTGATGAATTTAGGGCAATGATGCTTTAA 429 0.4079 MVIDKVTQYVRVFNHFDGNGDGKISSSELRQCVEAIGGKMSNEEAEVAVELLDSDGDGLVGLDDFVRFVEGGKEEEKVNDLREAFKMYEMEGFGCITPKSLKRMLGRLGECRSVDECQAMIAKFDIDGDGMLSFDEFRAMML 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03029 142 Gene3D - 74 142 - -
Tsu03g03029 142 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Tsu03g03029 142 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 142 - -
Tsu03g03029 142 SMART efh_1 44 72 IPR002048 GO:0005509
Tsu03g03029 142 SMART efh_1 116 142 IPR002048 GO:0005509
Tsu03g03029 142 SMART efh_1 8 36 IPR002048 GO:0005509
Tsu03g03029 142 SMART efh_1 80 108 IPR002048 GO:0005509
Tsu03g03029 142 Pfam EF-hand domain pair 94 141 IPR002048 GO:0005509
Tsu03g03029 142 Gene3D - 3 73 - -
Tsu03g03029 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Tsu03g03029 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Tsu03g03029 142 CDD EFh 80 141 IPR002048 GO:0005509
Tsu03g03029 142 CDD EFh 11 69 IPR002048 GO:0005509
Tsu03g03029 142 Pfam EF-hand domain pair 11 69 IPR002048 GO:0005509
Tsu03g03029 142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Tsu03g03029 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Tsu03g03029 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 142 - -
Tsu03g03029 142 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Tsu03g03029 142 SUPERFAMILY EF-hand 7 142 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03029 Tsu-Chr3 41595492 41595920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03029 12 141 EF-hand Containing Proteins AT1G76640 49.624 8.54e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03029 K13448 - fve:105352384 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03029 03 41595492 41595920 Tsu03g03029 03 41595492 41595920 ECH
Tsu04g00615 04 5719538 5719963 Tsu03g03029 03 41595492 41595920 PCT