Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03078 ATGGGGATCCCTGGATTGAGCAATCAGAATAATGGACAAAAATGGTTAGGCATAACTGAGCCGATTTCATTGGCTGGACCAACTGAGGAAGATGTGATCAAGAGCCAAGAACTTGAAAAGTACTTGCAAGGTGTTGGATTGTATGAGAGTCAGCAGGAGGCAGTGGGTAGGGAAGAGGTACTTGGCAGGCTAGACCAGATTGTGAAGATTTGGGTTAAGACGATTAGCCGGGCAAAGGGATTCAATGAACAACTGGTGCACGAAGCAAATGCCAAGATTTTCACTTTTGGCTCCTATCGACTAGGGGTGCATGGCCCTGGAGCTGATATTGATACCCTTTGTGTGGGACCTAGACATGCAACTAGAGAAGAAGATTTCTTTGGTGAGCTACAGAAGATGCTAGCTGAGATGGAGGAAGTAACTGAATTGCACCCTGTGCCTGATGCTCATGTTCCTGTGATGAAATTCAAGTTCAATGGAGTTTCTGTAGATCTTCTGTATGCAAGATTGGCATTGTGGGTTATTCCTGAAGACTTAGATGTATCACAGGAATCAATATTACAAAATGTAGACGAACAAACTGTTCTCAGTCTCAATGGATGTCGAGTAACTGATCAAGTCCTTCGTTTAGTTCCAAATATTCAGAATTTTCGCACAACATTGAGATGCATGAGGTTTTGGGCGAAGCGTCGTGGTGTATATTCAAATGTTGCTGGTTTTCTTGGTGGTATTAACCTGGCATTGCTTGTTGGTCGAATATGCCAGCTTTATCCTAACGCACTTCCTAATATGTTGGTATCTCGATTCTTTAGGGTATATACTCAGTGGCGATGGCCGAATCCAGTCATGCTTTGTGCTATCGAAGAAGGATCTCTTGGACTATCGGTTTGGGATCCTAGAAGGAACCCTAAAGATAAATATCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAACTCTACTTACAATGTGACAACAAGTACACTGCGTATTATGTCAGATGAGTTTAAGAGGGGAAGTGAAGTATGTGAGGCTATGGAGGCTAGCAAGGCTGACTGGGATACTCTTTTTGAGCCTTATCCCTTTTTTGAAGCTTACAAGAATTACCTACAGATAGATATTACAGCAGAGAATCCAGACGACCTTAGACAATGGAAAGGATGGGTTGAGTCTCGTCTCCGCCAATTGACATTGAAGATTGAGAGGTACACTTATGGCATGCTTCAGTGTCATCCATATCCTGGCGAATTTTCAGACAAATCTAGATCCTTCCACCAATGTTACTTTATGGGTCTGCAGCGTAAACAAGGAGTTCCGGTAAATGAAGGTGAACAATATGATATAAGGCTAACTGTAGAAGAATTCAAGGGTTCTGTCAACGCGTACACTTCATGGAAACCTGGAATGGAAATCCACGTCTCCCATGTGAAACGCCGTAACATACCAAATTTTATATTTCCTGGTGGCGTTCGACCTTCGTATCTTTCTAAAGCAACTGGTGAGAATAGACAAAGTTCGAAATCAAGGGTTTCTGGTCAAAGTCAAGCTGAAAAGTCTCAAGGAGGTAAAACAGCTGTACTTGGAGCAGATGACGCAAGGAAGAGAAAGCGATCGGAGGATAATAATACCTCGAGGGTTTCAAAGTCCTCTTTATCTCCTCCCAATAGGGAAGTTAATGAAGATAGAACTCTTATTAGTGCTACTAGTTCTTGTTCTATGAAATTCGATGACTCTGAAGTCAATAGTATGGGTGATCAAAAGCGTCAGAAACCTTGCCTGAAATTGGCCGGTGAGATTCCTTCTGGTGATAATGTATCCAATGTATCAGCGATGCATAACAAACAACCTGATGCTCCTGATACTTCTAGCACCAAAGAAGAAGAACGACTAGCCATCGAGCAGATTATGTCTGGTCCGTATGAAGCGCATCAAGCTTTGGCACAAGAACCGGATGAGCTTGAAGAAGATTTGGGGTATAGAAATCAAGTCAACGATAATGGTGGGAGTGTGAAAAGCAACAATTTTGCCTCTCCAAGCTCAACGTTTGCGGTAGCGGAAGAGCAAGTTATTTCTAAGGAAACGATATGTTCAACTCATTCGTGTTCTAATGGAGGCTTGGAGGAGCTTGAGGTTATTCTCTTATTCTGGCTTAAATTTGGAAGATTTTCACTGTCAGATTcttcaataaaatattatgcaGCAATTGTAAATAGTTCTTACTAG 2229 0.4181 MGIPGLSNQNNGQKWLGITEPISLAGPTEEDVIKSQELEKYLQGVGLYESQQEAVGREEVLGRLDQIVKIWVKTISRAKGFNEQLVHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELQKMLAEMEEVTELHPVPDAHVPVMKFKFNGVSVDLLYARLALWVIPEDLDVSQESILQNVDEQTVLSLNGCRVTDQVLRLVPNIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINLALLVGRICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLSVWDPRRNPKDKYHLMPIITPAYPCMNSTYNVTTSTLRIMSDEFKRGSEVCEAMEASKADWDTLFEPYPFFEAYKNYLQIDITAENPDDLRQWKGWVESRLRQLTLKIERYTYGMLQCHPYPGEFSDKSRSFHQCYFMGLQRKQGVPVNEGEQYDIRLTVEEFKGSVNAYTSWKPGMEIHVSHVKRRNIPNFIFPGGVRPSYLSKATGENRQSSKSRVSGQSQAEKSQGGKTAVLGADDARKRKRSEDNNTSRVSKSSLSPPNREVNEDRTLISATSSCSMKFDDSEVNSMGDQKRQKPCLKLAGEIPSGDNVSNVSAMHNKQPDAPDTSSTKEEERLAIEQIMSGPYEAHQALAQEPDELEEDLGYRNQVNDNGGSVKSNNFASPSSTFAVAEEQVISKETICSTHSCSNGGLEELEVILLFWLKFGRFSLSDSSIKYYAAIVNSSY 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03078 742 Gene3D - 17 359 - -
Tsu03g03078 742 Pfam Poly(A) polymerase predicted RNA binding domain 364 424 IPR007010 GO:0003723|GO:0043631
Tsu03g03078 742 MobiDBLite consensus disorder prediction 605 620 - -
Tsu03g03078 742 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 680 - -
Tsu03g03078 742 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Tsu03g03078 742 MobiDBLite consensus disorder prediction 499 523 - -
Tsu03g03078 742 Pfam Nucleotidyltransferase domain 77 170 IPR002934 GO:0016779
Tsu03g03078 742 MobiDBLite consensus disorder prediction 605 627 - -
Tsu03g03078 742 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Tsu03g03078 742 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
Tsu03g03078 742 CDD NT_PAP_TUTase 57 211 - -
Tsu03g03078 742 MobiDBLite consensus disorder prediction 546 563 - -
Tsu03g03078 742 PANTHER POLY A POLYMERASE 1 680 - -
Tsu03g03078 742 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
Tsu03g03078 742 MobiDBLite consensus disorder prediction 497 563 - -
Tsu03g03078 742 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Tsu03g03078 742 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Tsu03g03078 742 MobiDBLite consensus disorder prediction 530 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03078 Tsu-Chr3 42346430 42351401 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03078 K14376 - gmx:100816915 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00066 02 419842 425100 Tsu03g03078 03 42346430 42351401 ECH
Tsu03g03078 03 42346430 42351401 Tsu03g03078 03 42346430 42351401 ECH