Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00066 ATGGGGAGCCCTGGGTTGAGCAACCGCAGTAGCGGGCAGCAGCAACGATGGTTAGGGATAACGGAACCCATATCATTGAGCGGACCGACTGAATATGATGTTGCCAAGACCCGTGAACTCGAGAAGTACTTGCAAGACGCCGGCTTGTATGAGAATCAGGAGGAAGCGATTTGTAGGGAGGAAGTGCTAGGCAGGCTGGACCAGATTGTGAAGATTTGGGTCAAAACCATTAGCCATGCAAAGGGATTTAACGAACAAATGGTGCAAGAAGCAAATGCAAAGATTTTTACTTTTGGCTCCTATCGCCTAGGGgtgcatGGCCCTGGAGCAGATATTGACGTTCTTTGTGTGGGACCTAGACATGCAACCAGAGATGAAGATTTCTTTGGTGAGCTACATAAAATGCTATCTGAGATGCCAGAAGTGACCGAGTTGCACTCAGTGCCTGATGCTCATGTTCCAGTGATGGGTTTCAAGTTCAATGGTGTCTCTTTGGATCTCCTTTATGCAAAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATTTATCACAGGAAGCAATATTACAAAATACAGACGAGCAAACTGTTCGCAGTCTTAATGGTTGTAGAGTGACTGATCAAATCCTGCGTTTGGTTCCAAATATTCAGAATTTTCGCACGACATTGAGATGCATGAAGTTATGGGCTAAGCGTCGTGGCGTTTATTCAAATGTTGCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTGGTTGCTCGAATATGCCAGCTATATCCGAATGCACTGCCTAGTATGTTGGTGTCACGATTCTTTAGGGTATATACTCAGTGGCATTGGCCAAACCCAGTAATGCTTTGCGCTATTGAAGAAGGATCTCTTGGACTTCAAGTTTGGAATCCTAGAAGAAATCCCAAGGATAAATATCATATAATGCCGATAATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTGTCGTTAAGTACATTGCGTATTATGACAGAGGAGTTTCAGAGGGGACATGAAATATGTGAGGCTATGGAGGCTAACAGCGCTGATTGGGATACTCTTTTTGAGCCCTATCCATTTTTTGAAGCTCATAAGAATTATTTGTGGATAGACATTTCTGCAGAGAATGCTGATGATCTTAGAAACTGGAAAGGCTGGGTTAAGTCTCGCATGCGGCAGTTGATATTGAAGATTGAGAGGGACACTTTTGGCATGCTTCAGTGTCATCCACATCCTGATGATTTTTCAGATAAATCTAGACATCTACACTGTTCGTACTTCATGGGTCTGCAACGTAAGCAAGGAGTTGCTGCCACTGAAGGCGAACAATTTGATATAAGACTAGCTGTTGATGAATTTAAGCATACTGTTGGTATGTACAATCAATGGAAACCTGGAATGGATATCTCCGTCTCCCATGTGAAACGCCGCAATATACCTGCCTTTGTATTTCCTGGTGGTGTTCGGCCTAACCGTCCGTCCAAAGTAACCTGGGAGAGTAAGCGAAGTTCAGAGCTTAGGATGTCCGGCCATGGTCAAGCAGAAAAGTCTCAAGAAGGTAAAGTGGCTGCATTAGGAGCAAATAATGATAGGAAGAGAAAGCGAGCAGAGGATAGTACGGATGACTTGAGAAATTCCAAGGTCTTTTCATCTTTGCCACCCTCCAGCAGGGAAGTTCATGAAGATGGAAATCCTGTCAGCATTGCTAGTTCTTGCTCTGTGAAATGCGATGACACAGAAGTCAACAGTATGAGTGAACAAAAGAGTGAGAAACCTGATTTGAATTCTTCTGGGGAGTATCCTTCTGTGGATAGAGAGACCAATGGATCAGAGAAATGCAACTCACAAATTAACCCTCTGCTTACTGCTACTGATACATCTAGTTTTAACGAAGCAGGAAAGCTCGACATTGAGAAGATTGCGTGTGGTCCATACGATGCACATCAAGTCTTGTCAGGAGAACCTGCTGAGCTTGAAGATGATCTTCAGtatagaaatcaaataaaagattttGGCGGGAACCTGAAAAACAGCAACTTGGACTCTTCAAACTCAGAGTCTGTAGTGGCAGCAGAATCAGTTTTTTCTCAAAAGGAAAATATTAGTTCAACTCATATATACTCTAATGGGGGCTTGGAGGAACTTGAGCCTGCTGAACTCACAGCGACATTGTTAAGTGGGAATCCTGCACCAGTACCACAGCGGAAACCCCTTATTAGGTTGAATTTCACCTCCTTGGGGAAAGCTGCTGACAAAAGTTCTTAG 2283 0.4323 MGSPGLSNRSSGQQQRWLGITEPISLSGPTEYDVAKTRELEKYLQDAGLYENQEEAICREEVLGRLDQIVKIWVKTISHAKGFNEQMVQEANAKIFTFGSYRLGVHGPGADIDVLCVGPRHATRDEDFFGELHKMLSEMPEVTELHSVPDAHVPVMGFKFNGVSLDLLYAKLSLWVIPEDLDLSQEAILQNTDEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMKLWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPSMLVSRFFRVYTQWHWPNPVMLCAIEEGSLGLQVWNPRRNPKDKYHIMPIITPAYPCMNSSYNVSLSTLRIMTEEFQRGHEICEAMEANSADWDTLFEPYPFFEAHKNYLWIDISAENADDLRNWKGWVKSRMRQLILKIERDTFGMLQCHPHPDDFSDKSRHLHCSYFMGLQRKQGVAATEGEQFDIRLAVDEFKHTVGMYNQWKPGMDISVSHVKRRNIPAFVFPGGVRPNRPSKVTWESKRSSELRMSGHGQAEKSQEGKVAALGANNDRKRKRAEDSTDDLRNSKVFSSLPPSSREVHEDGNPVSIASSCSVKCDDTEVNSMSEQKSEKPDLNSSGEYPSVDRETNGSEKCNSQINPLLTATDTSSFNEAGKLDIEKIACGPYDAHQVLSGEPAELEDDLQYRNQIKDFGGNLKNSNLDSSNSESVVAAESVFSQKENISSTHIYSNGGLEELEPAELTATLLSGNPAPVPQRKPLIRLNFTSLGKAADKSS 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00066 760 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 364 490 IPR011068 GO:0003723|GO:0016779|GO:0031123
Tsu02g00066 760 Pfam Nucleotidyltransferase domain 84 150 IPR002934 GO:0016779
Tsu02g00066 760 MobiDBLite consensus disorder prediction 572 586 - -
Tsu02g00066 760 Pfam Poly(A) polymerase predicted RNA binding domain 425 497 IPR007010 GO:0003723|GO:0043631
Tsu02g00066 760 Pfam Poly(A) polymerase predicted RNA binding domain 366 425 IPR007010 GO:0003723|GO:0043631
Tsu02g00066 760 Pfam Poly(A) polymerase central domain 19 363 IPR007012 GO:0004652|GO:0043631
Tsu02g00066 760 PANTHER POLY A POLYMERASE 1 722 - -
Tsu02g00066 760 SUPERFAMILY Nucleotidyltransferase 15 211 IPR043519 -
Tsu02g00066 760 MobiDBLite consensus disorder prediction 532 550 - -
Tsu02g00066 760 MobiDBLite consensus disorder prediction 594 621 - -
Tsu02g00066 760 SUPERFAMILY PAP/OAS1 substrate-binding domain 214 363 - -
Tsu02g00066 760 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 722 - -
Tsu02g00066 760 MobiDBLite consensus disorder prediction 501 520 - -
Tsu02g00066 760 Gene3D Poly(A) polymerase predicted RNA binding domain 365 480 - -
Tsu02g00066 760 Gene3D - 19 361 - -
Tsu02g00066 760 Gene3D Beta Polymerase, domain 2 51 207 IPR043519 -
Tsu02g00066 760 MobiDBLite consensus disorder prediction 496 621 - -
Tsu02g00066 760 CDD NT_PAP_TUTase 59 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00066 Tsu-Chr2 419842 425100 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00066 K14376 - gmx:100816915 1130.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00066 02 419842 425100 Tsu03g03078 03 42346430 42351401 ECH
Tsu02g00066 02 419842 425100 Tsu02g00066 02 419842 425100 ECH