Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03030 ATGGTTTTAGGTATGAGAGGAAAGAACATGAGAACTAGCAAAGTTCAAATGGATTATCTCATTCATATTCAAGAGATTAAGCCTTGGCCTCCATCACAATCATTAAGATCCCTCGGTTCTGTTTTAATGGAAATGAAGAATGGTTCTAACAGATTAAGTTCTACTAAACTAGTATCACCTTCACTTGGTTCAGTTATAGGTGAAGGAAGAATAGAATTCAATGAATCATTTAGAATTTCAGTGACATTGTTGAGAGATGCATCCATTAGAAGCGGCGATTTTGATGTGTTTCAAAAGAATTTCTTGGAATTCAACTTGTATGAGCCAAGAAAAGATAATAAGATTGTTAAGGGTCAAGTATTAGGAAGTGCTATTGTAGATTTAGCTGATTATGGAATAATTAAAGAAGGATTAAGCATTAGTACATCTTTGAATTGCAAGAGGAGTTATAGAAACAATGATCAACCACTATTGTTTATTAAGATTCAGCCTGTTGAAAAGGTTCGTGTTCGTTCTTCGTTGAAGGAAAGGTTTTCGAATGATGTTTTGGAGGAGAATAGTAATAGTGGTGGTGATTCGGTATCAACGttgatgaatgaagaatatGCTGAGGAAGCTGAGATTGCTTCTTTTACTGATGATGATGTTTCTTCGCATTCATCTGTGGCAGCTGTTTCTAATTCATTTGAGTCTAGTGGTTTTACACCTCCTACATTGGATAAGAATGAACCCAATGGACAAATCCAAAAGACTAATTTGAATGACAAGGAACATCATTTGGCTTCACAATCAAGGCTTGAAAACATGAATATGATGAACAGTTCATCATCAATGGATGCATCTTCTGGTTTTGACTCTTCTTCACCATCTTCAGTTTGCGAAAATTTAGACAAAAATTCTAGAAGTAGAACAAGAAGCAATGATAGTTTAGATGGTAAAATTGATTACTTGGAAAACAAGGTAAAGATGCTTGAAGAAGAGTTAAGAGAAGCTGCTTCTATTGAAGCTGCTTTATATTCAGTTGTTGCTGAACATGGAAACTCCATGAGTAAGGTTCACGCGCCGGCTCGACGCCTTTCGAGGCTTTATCTTCATGCATGTAGAGAAAATGTTCAAGGAAGAAAGTACGGCGCAGCTAAAAGTTCTGTTTCAGGATTAGTCCTTGTTTCAAAGGCTTGTGGAAATGATGTTCCAAGGTTAACCTTTTGGTTGTCTAATACTATAGTGTTGAGAACAATCATAAGCCGAAACTCGAATTCATCAAATCATAGTGGTTCCAATAGGAGAAGAAAATCTGAGGCAGATGGAAATGGCAAAATATCATCCTCACAAAAGTGGAAAGGAGGAAAAACTGAAAATACAACATTAGGGTATGAATGTTTTGGTAACTGGGATGATCCACATGTATTCATTTCAGCATTGGAAAAAGTTGAAGCTTGGATCTTCTCTCGCATTGTAGAATCTATATGGTGGCAGACTCTAACTCCACATATGCAACATGTTGATACAAACTTGATCAACAAGGAAATAGATTCTGCCTCAAGGAAAAGCTACAAAAGGACATCTAGTTCATATGATCAAGATAAGGGTAATTTGTCACTAGATATTTGGAAGAATGCTTTTAAGGAAGCATGTGAAAAGCTCTGTCCTATTAGAGCTGGAGGACATGAGTGTGGCTGTTTGCCTGTTCTTCCTAAATTGATAATGGAGCAATGTGTGGCAAGATTAGATGTGGCTATGTTCAATGCAATTCTGAGGGAGTCTGATGATGAAATCCCAACTGATCCTATATCTGATGCTATTAGTGATCCTAAAGTTCTCCCGATTCCACCTGGAAATTCAACCTTTGGTGCTGGTGCTCAGCTGAAAACTGTGATTGGGAATTGGTCTAGATGGTTGAGTGATCTATTTGACATGAATGAAGAGGACTCACATGAAGATACACATAGCTCTAGTAACAATGAAGAGAAACATGACACATCTTTTAAGTCCTTTACTCTTCTTAATGCACTAAGTGATCTCTTAATGCTTCCTAAAGATATGCTATTATGTGCATCCATTAGGAGTGAGGTATGCCCCATGTTTAGTGCACCACTTATCAAGAAGATTCTTGATAACTTTTTACCGGATGAGTTTTGCCCTGATCCAGTTCCTACAACTGTTCTTGAAGCTTTTGACTTAGAGAGTGATATAGAAGATGGAAAGGAGTTTGGTAACAACTTTCCATGCACTGCAGCTCCAATTGTCTATTCACCACCACCGATAACTTCCGTCGCAAGCATTATCGGAGAGATTGGAAGCAAATCTCAGCTAAGAAGAAGCAAATCCTCTGTTGCTAGGAAGTCATACACAAGTGATGATGAGCTCAATGAATTGAAATCACCATTATCTTCAATATTCTTCGGAGATTCCTCGTCCTCAACGGTAACAAAATCGAATTTGAAGTCGAGAGAAATTCGCAACGAATCTCCTGTTAGATATGATCTTCTTAGGGATGTGTGGATGAATAGCAATTAG 2517 0.3735 MVLGMRGKNMRTSKVQMDYLIHIQEIKPWPPSQSLRSLGSVLMEMKNGSNRLSSTKLVSPSLGSVIGEGRIEFNESFRISVTLLRDASIRSGDFDVFQKNFLEFNLYEPRKDNKIVKGQVLGSAIVDLADYGIIKEGLSISTSLNCKRSYRNNDQPLLFIKIQPVEKVRVRSSLKERFSNDVLEENSNSGGDSVSTLMNEEYAEEAEIASFTDDDVSSHSSVAAVSNSFESSGFTPPTLDKNEPNGQIQKTNLNDKEHHLASQSRLENMNMMNSSSSMDASSGFDSSSPSSVCENLDKNSRSRTRSNDSLDGKIDYLENKVKMLEEELREAASIEAALYSVVAEHGNSMSKVHAPARRLSRLYLHACRENVQGRKYGAAKSSVSGLVLVSKACGNDVPRLTFWLSNTIVLRTIISRNSNSSNHSGSNRRRKSEADGNGKISSSQKWKGGKTENTTLGYECFGNWDDPHVFISALEKVEAWIFSRIVESIWWQTLTPHMQHVDTNLINKEIDSASRKSYKRTSSSYDQDKGNLSLDIWKNAFKEACEKLCPIRAGGHECGCLPVLPKLIMEQCVARLDVAMFNAILRESDDEIPTDPISDAISDPKVLPIPPGNSTFGAGAQLKTVIGNWSRWLSDLFDMNEEDSHEDTHSSSNNEEKHDTSFKSFTLLNALSDLLMLPKDMLLCASIRSEVCPMFSAPLIKKILDNFLPDEFCPDPVPTTVLEAFDLESDIEDGKEFGNNFPCTAAPIVYSPPPITSVASIIGEIGSKSQLRRSKSSVARKSYTSDDELNELKSPLSSIFFGDSSSSTVTKSNLKSREIRNESPVRYDLLRDVWMNSN 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03030 838 ProSiteProfiles C2 NT-type domain profile. 7 166 IPR019448 -
Tsu03g03030 838 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 1 247 - -
Tsu03g03030 838 MobiDBLite consensus disorder prediction 228 251 - -
Tsu03g03030 838 MobiDBLite consensus disorder prediction 418 449 - -
Tsu03g03030 838 Coils Coil 307 337 - -
Tsu03g03030 838 MobiDBLite consensus disorder prediction 272 297 - -
Tsu03g03030 838 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 14 132 IPR019448 -
Tsu03g03030 838 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 235 837 IPR021827 GO:0005643
Tsu03g03030 838 MobiDBLite consensus disorder prediction 272 310 - -
Tsu03g03030 838 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 235 837 - -
Tsu03g03030 838 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 1 247 IPR021827 GO:0005643
Tsu03g03030 838 MobiDBLite consensus disorder prediction 228 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03030 Tsu-Chr3 41599008 41605404 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03030 - - gmx:100818584 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03030 03 41599008 41605404 Tsu03g03030 03 41599008 41605404 ECH
Tsu04g00617 04 5736952 5740850 Tsu03g03030 03 41599008 41605404 PCT