Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02808 ATGGGGAAAATTTGGTTTTCAAGATGGTTTTTTATGATTATGGTGATGAGTAAATTTTTTTGCTATGTGGAAGGACTTGGTGTGAATTGGGGAACACAAGCAACACATCCATTGAAGCCAGACACAGTTGTGCAAATGTTGAAAGATAATGGAattgaaaaagttaaattatttgatGCTGATGAAGAAACTATGAGTGCACTTGGTGGGTCAGGAATTGAAGTTATGGTTGCTATACCTAATAATCAATTAGCTGAAATGACTGATTATGATCGTGCTTTGCAATGGGTTAGAAAGAATGTTACTAGTTATAACTACAAATCAGGTGGAGTTAATATcaaGTATGTAGCAGTTGGAAATGAGCCATTTTTGAAATCCTACAACAATTCATTCTTGAATGTAACTTTCCCTGCCCTACAAAATATCCAAAATGCCCTTAATGAAGTTGGATTAGGTGACTCAATTAAGGCCACAGTACCTTTAAATGCAGATGTTTATGAATCTCCAGATTCAAACAATGCTGTTCCATCAGCTGGAATATTTAGGCCTGATTTAAGTAACCTTATGACACAAATTGTTCAATTTTTGAGCAAAAACAATGCACCATTCACAGTCAACATTTACCCTTTTTTAAGTCTTTATGGAAATGACAATTTTCCATTTGATTATGCATTTTTTGATGGAGTAACAAATCCTATAAATGACAATGGAATTTTGTACACAAATGTTTTTGATGCAAATTTTGATACTTTAGTCTCAGCATTAAAATCAATTGGATATGGTGATATGCCCATTTTTGTTGGTGAAGTGGGCTGGCCCACAGATGGTGACAAAAATGCAAATATTCAAAATGCATTAAGATTTTATAATGCACTTTtacctaaacttgcatcaaataaaGGTACACCTAGAAGACAAGGTTACATTgaagtttatttatttggatTAATTGATGAAGATGCAAAATCTATTGAGCCAGGAAATTTTGAGAGACATTGGGGAATTTTTAGTTATGATGGTAAACCTAAATTTCCAATGCATGTATCAAGTCAACATGGtggtcaaaataaattattagttgGTGCAAGAGATATGCATTATCTTGATCCAAAATGGTGCATGTTTAATCCTAATGCTAATAATTTAAGTAAGCTTGCAGATAATATTGATTATGCTTGCACTTTTGCTGATTGCACCCCACTTGGTTATGGATCTTCTTGCAACAATTTGGATGCTAATGGAAATGCTTCATATGCATTTAATATGTATTATCAAGCTCAAAATCAGAATGACTTGGCTTGCAATTTTGAAGGGTTGGCTATGATTACTACAAATAATATTTCAACTCCTACTTGtgattttattattcaaattaatccttcttcatcttcttctttgttgcCTTCATTTGttgctttcttgttttttaGTATACTACCTATGATTTTAATGtggtag 1458 0.3011 MGKIWFSRWFFMIMVMSKFFCYVEGLGVNWGTQATHPLKPDTVVQMLKDNGIEKVKLFDADEETMSALGGSGIEVMVAIPNNQLAEMTDYDRALQWVRKNVTSYNYKSGGVNIKYVAVGNEPFLKSYNNSFLNVTFPALQNIQNALNEVGLGDSIKATVPLNADVYESPDSNNAVPSAGIFRPDLSNLMTQIVQFLSKNNAPFTVNIYPFLSLYGNDNFPFDYAFFDGVTNPINDNGILYTNVFDANFDTLVSALKSIGYGDMPIFVGEVGWPTDGDKNANIQNALRFYNALLPKLASNKGTPRRQGYIEVYLFGLIDEDAKSIEPGNFERHWGIFSYDGKPKFPMHVSSQHGGQNKLLVGARDMHYLDPKWCMFNPNANNLSKLADNIDYACTFADCTPLGYGSSCNNLDANGNASYAFNMYYQAQNQNDLACNFEGLAMITTNNISTPTCDFIIQINPSSSSSLLPSFVAFLFFSILPMILMW 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02808 485 Pfam X8 domain 371 441 IPR012946 -
Tsu03g02808 485 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 5 472 - -
Tsu03g02808 485 SUPERFAMILY (Trans)glycosidases 26 347 IPR017853 -
Tsu03g02808 485 SMART X8_cls 371 454 IPR012946 -
Tsu03g02808 485 Gene3D - 368 464 - -
Tsu03g02808 485 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 5 472 IPR044965 GO:0004553|GO:0005975
Tsu03g02808 485 Gene3D Glycosidases 25 356 - -
Tsu03g02808 485 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Tsu03g02808 485 Pfam Glycosyl hydrolases family 17 26 345 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02808 Tsu-Chr3 37891064 37895469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02808 13 458 Miscellaneous Gene Families AT1G64760 72.422 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02808 - - mtr:MTR_6g032820 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02981 07 35470311 35473316 Tsu03g02808 03 37891064 37895469 PCT