Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02299 ATGGCCTCAGCTTCGAAAAAGACGACGCCACCATCGTCTTCTCCTTGTTGTCCCTCTCTCGACTCTCCCCGCTTAGCTGTCGCCGCTACCTCCGCCGTTGTCCAATCCGATCGCGTTCCTAACAACAACACCGTTGCCTTGATTCGTCCTCTTGATTCCCTTCCAGAACCTTCCACCACCAATGCTCCTTCTGCTAAGGGAATCACTTCGATGACAAGGCCTCAGTCAAGCCATCCTTTGGACCCGTTAACTGCGGCGGAAATTTCTGTTGCAGTGGCAACTGTGAGGGCTGCTGGAGCCACTCCAGAGCTTAGAGATAGTATGCGCTTCATTGAAGTAGTTTTGCTGGAACCAGATAAACATGTTGTTGCACTGGCAGATGCTTATTTTTTTCCACCTTTCCAACCATCATTACTTCCTAGAAGTAAAGGAGGGCCTGTAATTCCCACTAAACTCCCTCCAAGATGTGCTAGACTTGTTGTTTacaataagaaatcaaatgtgACTGCTCTGTGGATTGTCGAATTATCACAAGTGCATGCTGTAACTCGAGGTGGCCATCATCGAGGAAAAGTAATTTCATCACGTGTTGTTCCCGATGTTCAGCCTCCAATGGATGCGGAGGAATATGCAGAATGCGAGGCTGTTGTTAAAAGTTTCCCTCCTTTTATAGAGGCTATGAAGAAAAGGGGTATTGAAGACATGGACCTTGTAATGGTTGATCCCTGGTGTGTTGGTTATCATAGTGAAGCCGATGCTCCTGGTCGAAGACTTGCTAAACCTCTCCTATTTTGTCGATCTGAGAGTGACTGCCCTATGGAAAATGGTTATGCCCGCCCAGTTGAGGGCATTTATGTTCTTGTTGATATGCAAAACATGAAGGTGATAGAGTTTGAAGACCGTAAACTTGTTCCTCTGCCTCCAGTTGATCCCTTGAGGAACTATACTCCTGGTGAATCCAGAGGTGGCTCCGATAGAAGTGATGTCAAACCCTTACAAATTATTCAACCTGAAGGTCCAAGCTTTCGTGTCAATGGGTATTATGTTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACACCCAAAGAAGGGTTGGTTATATATTCTGTTGCATATGTTGATGGTAGTCGAGGGAGAAGACCTGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTACCCTATGGAGATCCAAATGAACCTCATTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGGAAAAATGCACATTCCCTCAAGAAGGGATGTGATTGTTTGGGCTACatcaaatattttgatgctCACTTTACAAATTTCACTGGTGGAGTGGAAACCATTGAAAACTGTGTATGTATGCATGAAGAGGATCATGGGATTCTCTGGAAGCATCAAGACTGGAGAACTGGCTTAGCAGAAGTCCGGAGGTCTAGAAGACTTTCAGTTTCTTTTGTATGCACGGTGGCCAACTATGAGTACGCATTTTTTTGGCACTTTTATCAGGATGGAAAGATTGAAGCTGAAGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCCTTGATGCCAGGAGAATATCGAAAATATGGAACCATGATTGCACCAGGTCTATATGCTCCAGTTCATCAACACTTTTTCGTTGCTCGTATGGACATGTCTGTTGATTCTAGACCTGGTGAAGCTTTGAATCAGGTTGTGGAGGTCAATATGAAAGTTGAAGAACCTGGTGAGAATAATATTCACCACAATGCATTCTATGCCGAAGAGACTTTGATCAGATCTGAATCAGAAGCAATGCGTGATTGCAATCCTTTAACTGCTCGACATTGGATTGTAAGGAACACAAGAACTGGCAACAGAACCGGACAATTGACAGGCTACAAGTTGGTACCAGGCTCAAACTGCTTGCCTTTGGCAGGTTCCGAGGCCAAGTTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATGTTTGGGTAACAGCATATTCACGTGATGAAATGTTTCCTGGAGGAGAATTTCCTAATCAAAATCCACGTGCTGGTGAAGGACTAGCTACATGGATTAAGCAAAACCGGTCTTTGGAAGAAACTAATATAGTTCTTTgGTATGTATTTGGAATCACGCATGTTCCTCGTCTAGAAGACTGGCCTGTTATGCCAGTAGAACACATTGGATTTATGCTCATGCCTCATGGATTCTTCAATTGTTCCCCTGCAGTAGATGTCCCGCCTAATTCATGTGAAGTTGAATCTAAAGACACTGACATCAAGGATAATGGTGCTTCGAAGCCAATTCAGAACGGTTTAGCGTCAAAGCTTTAG 2325 0.4366 MASASKKTTPPSSSPCCPSLDSPRLAVAATSAVVQSDRVPNNNTVALIRPLDSLPEPSTTNAPSAKGITSMTRPQSSHPLDPLTAAEISVAVATVRAAGATPELRDSMRFIEVVLLEPDKHVVALADAYFFPPFQPSLLPRSKGGPVIPTKLPPRCARLVVYNKKSNVTALWIVELSQVHAVTRGGHHRGKVISSRVVPDVQPPMDAEEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYHSEADAPGRRLAKPLLFCRSESDCPMENGYARPVEGIYVLVDMQNMKVIEFEDRKLVPLPPVDPLRNYTPGESRGGSDRSDVKPLQIIQPEGPSFRVNGYYVEWQKWNFRIGFTPKEGLVIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCMHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFVCTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALMPGEYRKYGTMIAPGLYAPVHQHFFVARMDMSVDSRPGEALNQVVEVNMKVEEPGENNIHHNAFYAEETLIRSESEAMRDCNPLTARHWIVRNTRTGNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNVWVTAYSRDEMFPGGEFPNQNPRAGEGLATWIKQNRSLEETNIVLWYVFGITHVPRLEDWPVMPVEHIGFMLMPHGFFNCSPAVDVPPNSCEVESKDTDIKDNGASKPIQNGLASKL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02299 774 MobiDBLite consensus disorder prediction 751 774 - -
Tsu03g02299 774 Gene3D Copper amine oxidase, catalytic domain 319 745 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Tsu03g02299 774 SUPERFAMILY Amine oxidase N-terminal region 202 319 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Tsu03g02299 774 Pfam Copper amine oxidase, N3 domain 203 306 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Tsu03g02299 774 SUPERFAMILY Amine oxidase catalytic domain 326 745 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Tsu03g02299 774 SUPERFAMILY Amine oxidase N-terminal region 76 204 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Tsu03g02299 774 Gene3D - 207 310 - -
Tsu03g02299 774 MobiDBLite consensus disorder prediction 1 19 - -
Tsu03g02299 774 PANTHER AMINE OXIDASE 43 767 - -
Tsu03g02299 774 MobiDBLite consensus disorder prediction 52 79 - -
Tsu03g02299 774 Pfam Copper amine oxidase, N2 domain 78 167 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Tsu03g02299 774 Pfam Copper amine oxidase, enzyme domain 332 740 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Tsu03g02299 774 MobiDBLite consensus disorder prediction 1 21 - -
Tsu03g02299 774 Gene3D - 62 205 - -
Tsu03g02299 774 PANTHER COPPER AMINE OXIDASE 43 767 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02299 Tsu-Chr3 25906780 25913804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02299 K00276 - gmx:100798722 1384.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02299 03 25906780 25913804 Tsu03g02299 03 25906780 25913804 ECH
Tsu04g02590 04 29247637 29249843 Tsu03g02299 03 25906780 25913804 PCT