Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01860 ATGAAAACAAAGATCTCCAAGTTGTcaaattttttgataaaaaaagttaaagtgAATAAGGCAGAACCACCTTTTGATCTTAAGGAAGCTTTTTCCAAGTTTACAAATGGTGAGAATCACATGTCAAAGGATCAACTACTACAATTCATGGTGGAGTATCAAGGAGAACAAAATTGCACCTTATTGGATTTGGAACCAATTTTTGAAAAGGTTTTGCAAAATGGAAGTTCTAGCAATGAAAGTACTAGCAATATTGCAGGACTTAGTTTGGATAAATTCATTGATTTTCTGCTTATTGATGAtttcaatggtcccttaaaaGATGAGGTACATGATGATATGAATGGtccattgtcacattatttcaTGTATACAGGACACAATTCCTACTTAACTGGGAATCAATTAACTAGTGAGAGCAGTGATGAGCCAATTATAGAAGCTTTGAAACAAGGTGTACGAGTTATTGAACTTGATTTATGGGCTTCCACTAAACATGGTGGTATTAAAGTTGTTCATGGAAGGACTCTTACCACTCCTGTTTCACTAACCACTTGTTTGGAATCCATTAAGAAACATGCTTTTCTCAAATCTCATTTTCCAGTCATTCTAACTTTGGAAGACCACTTAACACCTAAACTTCAAGCTAAATTTGCACAAGTGGCAATTCAAATATTTGGAGAAATGCTATATTGTCCTCAAACAGATTTTTTGACAGAATTTCCATCACCAGCATCACTCAAAAATATGATATATTTTTCATTTGATGGATGGCAGCATGTAAGTGATGAAGACAAGAAAGATATAAATACAAGTGATCACAAATCAAAGCAGCAAAATCCACGTGAATACAGACATTTGATTACAATCCATGGTGGGAAATCAGAAGGTTGTATGAAAGACAGTCTAAAAGTTGATGGTGGTAAAGTTAGAAGGCTAAGTTTGTGTGAGAAGAAACTCAAAACTGCTTCTGAATCTCATGGAGCTGACCTTATTAAGTTCACACAGAAAAATATCCTCAGAATTTTTCCTAAAGGAGAACGCGTACAATCGTCAAATTTTAGGCCACATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGTATGGCAAATCACTCTGGTTGATGCAAGGGATGTTCAAAGCAAATGGAGGATGCGGTTATGTGAAAAAACCTGAATTTCTAATTCAAGAAGGGGCAGGCAATGAGGTTTTTGATCCTAAAATAACATTGCCAGTGAAGCAAATATTAAAAGTAAAAGTATACAAAGGTGTTGGCTGGAAGTCAGATTTCAGTCGAACACACTTCGATCAATTCTCTCCACCAGACTTTTACGCAAAGGTTTATATTGTTGGAGTTGGAGCTGATTGTGCGAAGAAGAAAACAAGAGTAAAGATGGACAATTGGTATCCGATTTGGGACGAAGAGTTCGAATTCAAGTTGACTGTGCCGGAGCTCGCGTTGCTTCGGATGGAAGTAAATGATAAAGATCAGACAAAAGATGATTTTGCTGGACAAACTTGTTTGCCTGTATCAGAGCTGAGATGTGGATTTCGGTCTGTTCGTTTGTGTGACAGAAAGGGAAAGGAATTGAAGTCTGTCAAGCTTTTACTTCGCTTCCAACTTGAAACTTTATAG 1653 0.3569 MKTKISKLSNFLIKKVKVNKAEPPFDLKEAFSKFTNGENHMSKDQLLQFMVEYQGEQNCTLLDLEPIFEKVLQNGSSSNESTSNIAGLSLDKFIDFLLIDDFNGPLKDEVHDDMNGPLSHYFMYTGHNSYLTGNQLTSESSDEPIIEALKQGVRVIELDLWASTKHGGIKVVHGRTLTTPVSLTTCLESIKKHAFLKSHFPVILTLEDHLTPKLQAKFAQVAIQIFGEMLYCPQTDFLTEFPSPASLKNMIYFSFDGWQHVSDEDKKDINTSDHKSKQQNPREYRHLITIHGGKSEGCMKDSLKVDGGKVRRLSLCEKKLKTASESHGADLIKFTQKNILRIFPKGERVQSSNFRPHLGWMYGAQMVAFNMQGYGKSLWLMQGMFKANGGCGYVKKPEFLIQEGAGNEVFDPKITLPVKQILKVKVYKGVGWKSDFSRTHFDQFSPPDFYAKVYIVGVGADCAKKKTRVKMDNWYPIWDEEFEFKLTVPELALLRMEVNDKDQTKDDFAGQTCLPVSELRCGFRSVRLCDRKGKELKSVKLLLRFQLETL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01860 550 Gene3D C2 domain 414 550 IPR035892 -
Tsu03g01860 550 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 314 400 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu03g01860 550 ProSiteProfiles C2 domain profile. 402 530 IPR000008 -
Tsu03g01860 550 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 112 253 - -
Tsu03g01860 550 SUPERFAMILY EF-hand 23 103 IPR011992 -
Tsu03g01860 550 Gene3D Phosphatidylinositol (PI) phosphodiesterase 109 413 IPR017946 GO:0006629|GO:0008081
Tsu03g01860 550 SMART plcy_3 284 401 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu03g01860 550 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 313 399 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu03g01860 550 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 259 550 - -
Tsu03g01860 550 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 254 - -
Tsu03g01860 550 Pfam Phosphatidylinositol-specific phospholipase C, X domain 114 251 IPR000909 -
Tsu03g01860 550 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 421 546 IPR035892 -
Tsu03g01860 550 SMART C2_3c 421 528 IPR000008 -
Tsu03g01860 550 CDD C2_PLC_like 419 548 - -
Tsu03g01860 550 Pfam C2 domain 421 519 IPR000008 -
Tsu03g01860 550 SUPERFAMILY PLC-like phosphodiesterases 112 402 IPR017946 GO:0006629|GO:0008081
Tsu03g01860 550 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 259 550 IPR001192 GO:0035556
Tsu03g01860 550 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 254 IPR001192 GO:0035556
Tsu03g01860 550 PRINTS Phospholipase C signature 514 524 IPR001192 GO:0035556
Tsu03g01860 550 PRINTS Phospholipase C signature 360 378 IPR001192 GO:0035556
Tsu03g01860 550 PRINTS Phospholipase C signature 143 163 IPR001192 GO:0035556
Tsu03g01860 550 PRINTS Phospholipase C signature 339 360 IPR001192 GO:0035556
Tsu03g01860 550 PRINTS Phospholipase C signature 240 257 IPR001192 GO:0035556
Tsu03g01860 550 PRINTS Phospholipase C signature 117 135 IPR001192 GO:0035556
Tsu03g01860 550 SMART plcx_3 112 256 IPR000909 -
Tsu03g01860 550 Gene3D - 23 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01860 Tsu-Chr3 19177296 19185583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01860 7 548 Acyl Lipid Metabolism Gene Families AT2G40116 51.003 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01860 K05857 - gmx:100803435 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01860 03 19177296 19185583 Tsu05g03339 05 44684207 44688986 ECH
Tsu03g01860 03 19177296 19185583 Tsu03g01860 03 19177296 19185583 ECH
Tsu03g01860 03 19177296 19185583 Tsu05g03337 05 44676593 44679919 PCT