Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01748 ATGGAGGAAGATTCTCAGAACAATAGCACCAATACAAGCCATTTACTCGGTTCTGTTCCGGCTGTAATTGCTGATGCAAAAAATGTGAATGCTTCAAATAATCAAGTCCCTTATGCAAATATGCAAACATTCCCTCCCAATAGTGGAGGAGGAAGCAGAGAACAGGGATATCAAACTCTCGGAACTCCAACTGATACTTTTGGGCAACAGGAAGCTAATAACTGGCAGGGGTTCTTTAGTGTTTCGTCTTACACCCAGTATTTCAATGTGGATACAGATGTTGTCGTGAACAGATTGATAAGTTCCTTGAATCCAGTTGGTGATGACTTTTTTGCAAAGATAGATGCTAACCCTGATTTGTATGGGCTTATATGGATCTCAACGACATTGGTTTTTGTACTTACCTTACTTGGAAATCTTGCAACTTACCTTATGCAAAAACATATAGATGACAAGACTTCGTGGAACTTTGATGTTAACTTTGTGAATACGGCTGCATGGTCTATTTATGGCTATGTGATAGTTGTTCCATTGGCATACTATTTCTTCCTTCAGTATATGGGTTCAAATGCTAACCTTGTAAGGTTTTGGTGCTTGTGGGGGTATTCCCTCACCATTTTCATCCTGTCCTCTTTTCTATTGCTTATTCCATTTGAGATTCTTCGGTGGATTATAATAATCCTTACTGGCGTTGCCTCAGCTAGCTTTGTTGCTTTGAACCTACGATCCTTTATAGGAAATGATCTTTCAGTGTCCATAATTGCAGCATTTGTCTTGCAAATAGCTTTGGCAGTCTTCATCAAAgaTAACATTGTTGTATCTGTGGCGCAGAAAGCTTTCACCTTACACGATGATTGTGTGACTTATTATTCAAGTCTTGGGATAGATTTACATTCATCACGTCTTTTGGCTCATTGGAGCCCTCCTCCAAAAGGTGGTTGGGTGACTCGCTTTTCTCACTATAAAGTTGGTGGTGATGCGTTGTTTGCTGAGTTGCGGGCTATCCGGATGAGACTTGAATTTTGTTGCAACAAAGGTTATGATAACATTATTTGTGAGAGTGATTGCTTGAAAGTTGTTGAATTATTTAATGCAAGACGAATGCCTTGCACATCTATGCTATATACATCCTTCATATTAGAGAAGCTTTGCATGAGATTGGTAGCACTACACTAA 1176 0.3929 MEEDSQNNSTNTSHLLGSVPAVIADAKNVNASNNQVPYANMQTFPPNSGGGSREQGYQTLGTPTDTFGQQEANNWQGFFSVSSYTQYFNVDTDVVVNRLISSLNPVGDDFFAKIDANPDLYGLIWISTTLVFVLTLLGNLATYLMQKHIDDKTSWNFDVNFVNTAAWSIYGYVIVVPLAYYFFLQYMGSNANLVRFWCLWGYSLTIFILSSFLLLIPFEILRWIIIILTGVASASFVALNLRSFIGNDLSVSIIAAFVLQIALAVFIKDNIVVSVAQKAFTLHDDCVTYYSSLGIDLHSSRLLAHWSPPPKGGWVTRFSHYKVGGDALFAELRAIRMRLEFCCNKGYDNIICESDCLKVVELFNARRMPCTSMLYTSFILEKLCMRLVALH 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01748 391 Pfam Yip1 domain 104 266 IPR006977 GO:0016020
Tsu03g01748 391 PANTHER PROTEIN YIPF 3 268 - -
Tsu03g01748 391 PANTHER UNCHARACTERIZED 3 268 IPR039765 GO:0005794|GO:0016192|GO:0031267
Tsu03g01748 391 Pfam Reverse transcriptase-like 322 372 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01748 Tsu-Chr3 17858929 17862702 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01748 K22940 - gmx:100813483 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01748 03 17858929 17862702 Tsu03g01748 03 17858929 17862702 ECH
Tsu03g01748 03 17858929 17862702 Tsu05g03247 05 43771638 43776061 PCT