Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01740 ATGAAATCACCAATTAATCTAGAATTTCTCAGAACAACACACGCTCTTAAGATCGGTgctttctttttcatttcaatCACTTTCTTCTACTTAGGTAAACACTGGTCTGATGGTTATCAACAGCTCATTTTCTTCACACAAGATTCTGACTCAGATCTAAATTCCAATCATGAAGTTTCAATTTCACCTAATTTCAACAAATCATTCAATGTTTCTTCGTTAATTGATCATAATGATGTAGAAAAAGTTCCAGAAAAAACTCTAACACAACCACCGCCGGCGACACAACCGCCACCTCCACCGccggtggtggtggtgaaggCGGTGGATGATTCAGTTGAGAAATTCGGGATCGTGAATGAGAATGGAACGATGTCTGAGGAGTTTGAGGTTGGGAGTTTTGATCCGGAAATGGTGGATGATTGGGTTAATGAAACGCAGGTTGAGAAAGAAAGTTCTGAGAGTGTTGCGAAATTTGTGATTAAGAAATTTGGGTTGTGTAAGAGAGATATGAGTGAGTATATACCTTGTTTGGATAATGTAGAAGCGATTAAGAAGTTGCCATCAACTGAGAAAGGTGAAAGATTTGAACGGCATTGTCCTAATAAAAGGTTGAATTGTTTGGTTCCTGCACCTAAAGGGTACCGTGCCCCAATTCCATGGCCTAAAAGCCGAGACGAggtTTGGTTCAGTAATGTTCCTCATACTCGTCTTGTTGAAGATAAAGGCGGACAAAACTGGATTTCAAGAGAcaaaaataagtttaaatttCCGGGAGGTGGTACACAATTTATACACGGGGCAAATGAATACTTGGACCATATTGCTAAGATGATTCCTGAAATTACATTTGGTCGGCATATACGCGTGGCTCTTGATGTTGGTTGTGGTGTAGCTAGTTTTGGTGCGTACTTACTGCAACGGAATGTTGTGACCTTGTCTGTAGCTCCCAAGGATGTTCATGAGAATCAGATTCAGTTTGCTCTTGAGCGTGGGGTACCGGCCATGGTGGCAGCATTTGCAACTAGACGGTTATTATATCCAAGTCAAGCTTTTGACTTGATACACTGTTCACGCTGTAGAATTAATTGGACTCGAGATGatgggataTTGCTGCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTATTTTGTATGGGCTGCCCAGCCGGTTTATAAGCACGAAGAAGTTTTAGAAGAACAATGGCAAGAGATGCTTAATCTTACCACTCGGCTCTGCTGgaagtttttgaaaaaagatgGGTACATTGCAGTATGGCAGAAACCTTTTGACAATAGCTGCTATTTAAACCGTGAGGCAGGAACTAAACCTCCTCTATGCGACCCAAGTGATGACCCTGACAATGTTTGGTATGTTGATCTAAAAGCATGCATCTCTGAATTGCCTAAGAATGAATATGAAGCCAAAGTTACCGATTGGCCTGCACGTTTGCAAACCCCACCCAATAGGCTTCAAAGCATAAAACTTGATGCTTTTACATCCAGAAAAGAGCTATTTAAGGCAGAATCAAAATACTGGAATGAGATAATAGCAGGCTATGTTCGTGCTATGCATTGGAAGAAGATGGGATTAAGAAATGTTATGGACATGCGAGCAGGTTTTGGAGGATTTGCGGCAGCATTGATTGCGCAGAAACTTGACTGCTGGGTTATGAATGTTGTTCCTGTTAGCGGTTCAAACACCTTGCCTGTCATATACGACCGTGGATTAATTGGAGTCATGCATGACTGGTGCGAACCATTTGACACCTATCCCAGAACTTACGATTTCCTGCATGCAGCAAGCCTGCTTTCAGTTGAGAAGAAAAGATGCAATATGTCATCAATTATGGTTGAGATGGATCGGATACTAAGACCTGGTGGGCGTGTATACATCCGTGATTCTCTTGCCATAATGGATGAACTTCAAGAGATTGCCAAAGCAATAGGCTGGCACACGACACTACGAGACACAGCTGAGGGACCTCATGCAAGTTATAGGATCTTGGTTTGTGATAAGCATCTGCTACGCGCTTGA 2040 0.4059 MKSPINLEFLRTTHALKIGAFFFISITFFYLGKHWSDGYQQLIFFTQDSDSDLNSNHEVSISPNFNKSFNVSSLIDHNDVEKVPEKTLTQPPPATQPPPPPPVVVVKAVDDSVEKFGIVNENGTMSEEFEVGSFDPEMVDDWVNETQVEKESSESVAKFVIKKFGLCKRDMSEYIPCLDNVEAIKKLPSTEKGERFERHCPNKRLNCLVPAPKGYRAPIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGANEYLDHIAKMIPEITFGRHIRVALDVGCGVASFGAYLLQRNVVTLSVAPKDVHENQIQFALERGVPAMVAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEEVLEEQWQEMLNLTTRLCWKFLKKDGYIAVWQKPFDNSCYLNREAGTKPPLCDPSDDPDNVWYVDLKACISELPKNEYEAKVTDWPARLQTPPNRLQSIKLDAFTSRKELFKAESKYWNEIIAGYVRAMHWKKMGLRNVMDMRAGFGGFAAALIAQKLDCWVMNVVPVSGSNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDFLHAASLLSVEKKRCNMSSIMVEMDRILRPGGRVYIRDSLAIMDELQEIAKAIGWHTTLRDTAEGPHASYRILVCDKHLLRA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01740 679 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 14 677 IPR004159 GO:0008168
Tsu03g01740 679 Coils Coil 678 679 - -
Tsu03g01740 679 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 173 674 IPR004159 GO:0008168
Tsu03g01740 679 PANTHER METHYLTRANSFERASE PMT12-RELATED 14 677 - -
Tsu03g01740 679 Gene3D Vaccinia Virus protein VP39 268 433 IPR029063 -
Tsu03g01740 679 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 197 410 IPR029063 -
Tsu03g01740 679 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 508 652 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01740 Tsu-Chr3 17753365 17759525 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01740 - - gmx:100800414 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01740 03 17753365 17759525 Tsu03g01740 03 17753365 17759525 ECH
Tsu03g01740 03 17753365 17759525 Tsu05g03240 05 43681673 43686141 PCT