LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g01731	ATGGGACAATTAAAGATGCAAATGCCAGCTGGTCTCAATAATGGAATAGAGGATCAATTTGAGCAATGTGGTGCCGGATATCCTAACAAAACTACTATAGCATGCATGATTAATGCAGAAATTGGTTCTGTTTTGGCAGTCATGCGAAGAAATGTTAGATGGGGAGTTCATTATATGTCAGATGATGACCAATCAGAGCACTTCCTTGTTCAGTCTTTGAAGACActaagaaaacaaattttctCATGGCAGGATCAATGGCATTCCATTAATCCTGCCTTGTATCTCCAACCTTTTCTTGATGTAATTCAATCAGATGAAACCGGCGCACCAATTACTGGTGTTGCTCTGTCATCAGTTTACAAGATCTTAACTCTGGACGTGATTGAGCAAAACACCGTCAATGTTATTGATACCATGGACTTGGTGGTTGATGCTGTCACGAGTTGCAGATTTGAGGTGACTGATCCTGGATCAGAAGAAGTGGTATTAATGAAGATTTTACAAGTTCTTCTTGCCTGTGTGAAAAGTAAAGCATCTGTAATACTTAGTAACCAACACATTTGCACTATAGTAAATACTTGCTTCCGTATAGTTCATCAAGCCGGAACCAAAGGGGAGTTGTTGCAGCGGATAGCTCGATACACAATGCATGAACTTGTTAGGTGTATATTCTCCCACCTTCAAGAGATTGACATTGCAGAGACTCCGAAACAAGAGATCAGTGAGGTAAATAATGAGCTTGCTTCGGCAAGCAGACAATTAGAAAATGGGAGCCTGAACTCTGCGTATGGTGGTCAACCATTGTCCACGAGCCTTGCTTCCAGTACTGCATATGTTGGTACAATAACTGTAATGCCTGAAAACATAACTACTGCTAGCAGTGACAAGGAGAGTGATCTACGAGAATTGCAGCTCATGACTGAACCATATGGAGTTCCTTGTATGGTGGAGATATTTCACTTCTTGTGTTCTTTATTGAATGTTGTTGAGCATATGGGAATGAATCCTAGATCAAACACACTAACATTTGATGAAGATGTGCCTCTTTTTGCTTTAAGTTTGATTAATTCAGCCATTGAGTTGGGAGGGCCTTCCTTTCGTCATCACCCCAGATTGCTGAGTTTAATTCAAGATGAagtatttcatattcttatgcAATTCGGTTTGTCAATGAGTCCTCTTGTACTTTCAATGGTGTGTAGCACTGTTCTCAATTTGTATCACCATCTTCGAACAGAACTCAAATTACAGCTAGAAGCATTTTTTTCATGTGTAATTTTGAGGCTTGCACAAAGCAAATATGGGGCTTCATATCCGCAACAGGAGGTTTTGATGGAGGCACTTGTTGATTTGTGCAGGCAAAATACATTCATGGTGGAGATGTTTGTTAACTTTGATTGTGACATTTCTTGCAGTAATATCTTTGAAGATATTGCTAATTTGTTGTCCAAAAGTGCTTTTCCGGTAAATAACCCATTATCTTCCATGCATATTCTTGCTTTGGATGGTCTTATTGCTGTAATGCAGGGAATGGCCGATAGGATAGGTAATGGATTTGTCAGTTCAGAACATTCTCCTGTGAATTTTGAAGAGTATATACCGTTCTGGCTGGAGAAGTGTGAAAATTTTGGTGACCCAAATGAATGGGTTCCTTTTGTCCGCCGAAGAAAGTACTTCAAGAGAAGATTGATGATTGGAGCAGATCACTTTAATCGTGATGCTAAGAAGGGCCTCGAGTTTCTCCAGGGAACACATCTTTTGCCTGACAAACTAGATCCCCAAAGTGTTGCCTGCTTTTTCAGATTCACCGCTGGGTTGGATAAGAATGTCATTGGTGATTACTTAGGAAATCACGATGAATTCTGTGTTCAGGTTCTTCGTGAATTTTCTAGAACATTTGATTTCCAAGATATGACCTTAGACACAGCTCTGCGTATATTTTTGGAGACTTTTAGGCTACCTGGAGAATCACAGAAGATACATAGGGTGCTTGAAGCTTTCTCTGAGAGATATTATGAGCAGTCACCACATATCCTAGTTAACAAGGATGCTGCTCTTGTGCTGTCATACTCGATTATAATGCTTAATACTGATCAGCACAATGTGCAGGTCAAAAAGAAGATGACAGAAGCAGATTTTATCAGGAATAATAGGCATATAAATGGCGGCAACGATCTACCTCGAGAATTCCTGTCTGAGATTTACCAATCAATTTGCAAGAATGAAATCCGCACAACCCCTGAATCAGGCTTTGGATCTCCTGGAATGACCCCAAGTCGGTGGATTTCTCTAATACACAAGTCAAAAGCAACCGCTCCATACATTGTATCTGATTCCAAAGCATATCTGGATTATGATATGTTTGTTATATTGTCAGGCCCAACAATCGCGGCCGTTTCTGTGGTATTTGATAATGCTGAAAATGAAGAGGTATACCAAACATGTATAGATGGATTCTTAGCTATTGCAAAGATATCAGCTTACTATCATCTTGAAAATGTTCTAGATGATCTGATTGTGTGCCTCTGTAAATTCTTCACCATTTTGGATCCATTATCAGTTGAGGAATCTGTCCAAGCCTTTGGAGATGACACAAAAGCACGAATGGTAACTGAGACAGTTTTCACTATTGCAAGTAGGTATGGTGATTACATTCGTACTGGGTGGAGGAATATTCTTGATTGCATCTTAAGATTGCACAAGTTAGGCCTTCTTCCTACTTATTTGGCCAGTGATGCAGTTGACGAGTCAGAGCCTTCTACAAAAACTGGACATGGGAAACTTAAATCAAATTCTTTATCATCAACTCGTCTTCAATCTATTAGTACTCCAAAGAGATCCTCGGGGTTATTGAGCAGGTTTAGTCAACTATTATCTCTTGCCACTGACGAGCCAAGAGCAATACCAACTGAAGAACAACTGGCCGCTCATCATCAAGCTGTACAAACAATTCAAAAGTGTAACATCGACAGCATATTCACTGAAAGCAAATTCTTGCAGGCTGAATCCCTATTGCAGCTGGTAAGATCGCTCATCAATGCTGGAGCTCAATCTCAGAAGAGGAACAAAAAATCTCAGATTGAAGATGCTTCGGTTTTCTGCCTGGAGTTACTCGTAGCAATCACTCTAAAGAACAGGGATAGGATTGGGCTTATCTGGAAGAGTGTTTATGAGCACATATCCAATATTGTTAAATCAACCGTGATGCCATGTGCACTGATAGAAAAGGCTGTTTTAGGACTTCTAAGGATTTGCCATCGCTTACTTCCCTATAAAGAGAACATGGCTGATGAACTTTTGAAATCCCTGCAACTTATCTTGAAGCTTGATGCACTGGTTGCAGATGCATACTATGAACAGATAACATGGGAAGTCAGTCGCCTTGTTAAGGCAAATGCATCTCATATCAGATCTCATTTAGGATGGCGGACAATTACGTCACTACTTTCTGTCACCGCTAGACACCTTGAAGCATCCGAGGTTGGATTTGATACACTGTCATTCATTATGTCTGATGGAACTCACTTGCTCCCTGCTAATTATATTCTCTGCATAGATGCTGCGAGGCAGTTTGCTGAGTCTCGCGTAGGACTGGTGGGTCGGTCCATAGATTCACTAGACCTTATGGCAGGTTCTTTCAACTGTTTGCAAAAGTGGACTGGTGATGCAAAACAAGCAGCAAAAGAAGAGGAAGTAGAAAAGATGTTGCAGGATATTGGGGAAATGTGGTTGAGGTTAGTACAAGGACTAAGGAAAGTATGTTTGGACCAAAGAGAGGAGGTTAGAAATCACGCGCTGTTATCTTTGCAGAAATGCATGACAGAAGCTGTTGAAACTCGTCTCCCATGTGATTTGTGGTTACAGTGTTTTGATCAAGTGATATTCACCTTGCTCGATGACCTGCTTGATATTGTCGAGGAACACTCTCAAAAGGACTACCGGAACATTGAAGAAACACTCGTTCTTGCCATGAAGCTCTTATTTGAAGTTTTTCTCCAATTACTACAAGAATTATCACAACTCGAAACCTTTTCTAAACTATGGGTAGGTGTGCTAAGCCATGCAGAAAATTACGTGAAGGCGAAAGTTAGAGGAAGGAGAATCGAGAAGCTTCAGTTCCTTGTTCCGGAGCTTCTGAAGAACACGTTGGTTGTTATGAAATTAAAGGGCATACTAGTGGAGAATAGTGATTTATGGGAACTGACATGGTTACATATGAAGGATATAGTTCCCTCATTGCAGTCTGAGGTGTTACAAGAGCAGTTGGATCAAAAGCAGATTGAATCAGTTGCAAAATTGGAACATGATTCAAACATTTCAGTTCCTTCAAATGAAACACTTGGTCAAGATGGTGCTGTTATTATTGGTTAA	4374	0.4012	MGQLKMQMPAGLNNGIEDQFEQCGAGYPNKTTIACMINAEIGSVLAVMRRNVRWGVHYMSDDDQSEHFLVQSLKTLRKQIFSWQDQWHSINPALYLQPFLDVIQSDETGAPITGVALSSVYKILTLDVIEQNTVNVIDTMDLVVDAVTSCRFEVTDPGSEEVVLMKILQVLLACVKSKASVILSNQHICTIVNTCFRIVHQAGTKGELLQRIARYTMHELVRCIFSHLQEIDIAETPKQEISEVNNELASASRQLENGSLNSAYGGQPLSTSLASSTAYVGTITVMPENITTASSDKESDLRELQLMTEPYGVPCMVEIFHFLCSLLNVVEHMGMNPRSNTLTFDEDVPLFALSLINSAIELGGPSFRHHPRLLSLIQDEVFHILMQFGLSMSPLVLSMVCSTVLNLYHHLRTELKLQLEAFFSCVILRLAQSKYGASYPQQEVLMEALVDLCRQNTFMVEMFVNFDCDISCSNIFEDIANLLSKSAFPVNNPLSSMHILALDGLIAVMQGMADRIGNGFVSSEHSPVNFEEYIPFWLEKCENFGDPNEWVPFVRRRKYFKRRLMIGADHFNRDAKKGLEFLQGTHLLPDKLDPQSVACFFRFTAGLDKNVIGDYLGNHDEFCVQVLREFSRTFDFQDMTLDTALRIFLETFRLPGESQKIHRVLEAFSERYYEQSPHILVNKDAALVLSYSIIMLNTDQHNVQVKKKMTEADFIRNNRHINGGNDLPREFLSEIYQSICKNEIRTTPESGFGSPGMTPSRWISLIHKSKATAPYIVSDSKAYLDYDMFVILSGPTIAAVSVVFDNAENEEVYQTCIDGFLAIAKISAYYHLENVLDDLIVCLCKFFTILDPLSVEESVQAFGDDTKARMVTETVFTIASRYGDYIRTGWRNILDCILRLHKLGLLPTYLASDAVDESEPSTKTGHGKLKSNSLSSTRLQSISTPKRSSGLLSRFSQLLSLATDEPRAIPTEEQLAAHHQAVQTIQKCNIDSIFTESKFLQAESLLQLVRSLINAGAQSQKRNKKSQIEDASVFCLELLVAITLKNRDRIGLIWKSVYEHISNIVKSTVMPCALIEKAVLGLLRICHRLLPYKENMADELLKSLQLILKLDALVADAYYEQITWEVSRLVKANASHIRSHLGWRTITSLLSVTARHLEASEVGFDTLSFIMSDGTHLLPANYILCIDAARQFAESRVGLVGRSIDSLDLMAGSFNCLQKWTGDAKQAAKEEEVEKMLQDIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQKCMTEAVETRLPCDLWLQCFDQVIFTLLDDLLDIVEEHSQKDYRNIEETLVLAMKLLFEVFLQLLQELSQLETFSKLWVGVLSHAENYVKAKVRGRRIEKLQFLVPELLKNTLVVMKLKGILVENSDLWELTWLHMKDIVPSLQSEVLQEQLDQKQIESVAKLEHDSNISVPSNETLGQDGAVIIG	1457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g01731	1457	SMART	sec7_5	557	744	IPR000904	GO:0005085\|GO:0032012
	Tsu03g01731	1457	Gene3D	-	637	752	IPR023394	-
	Tsu03g01731	1457	ProSiteProfiles	SEC7 domain profile.	553	742	IPR000904	GO:0005085\|GO:0032012
	Tsu03g01731	1457	CDD	Sec7	561	744	IPR000904	GO:0005085\|GO:0032012
	Tsu03g01731	1457	SUPERFAMILY	Sec7 domain	558	745	IPR035999	GO:0005085\|GO:0032012
	Tsu03g01731	1457	Gene3D	-	554	636	-	-
	Tsu03g01731	1457	Pfam	Guanine nucleotide exchange factor in Golgi transport N-terminal	314	475	IPR032691	-
	Tsu03g01731	1457	Pfam	Sec7 domain	561	744	IPR000904	GO:0005085\|GO:0032012
	Tsu03g01731	1457	MobiDBLite	consensus disorder prediction	917	942	-	-
	Tsu03g01731	1457	MobiDBLite	consensus disorder prediction	925	942	-	-
	Tsu03g01731	1457	PANTHER	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	12	1447	-	-
	Tsu03g01731	1457	Coils	Coil	241	261	-	-
	Tsu03g01731	1457	PANTHER	PATTERN FORMATION PROTEIN GNOM PROTEIN	12	1447	-	-
	Tsu03g01731	1457	SUPERFAMILY	ARM repeat	339	1355	IPR016024	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g01731	Tsu-Chr3	17667711	17672775	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g01731	K18443		-	gmx:100802024	2290.38

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu05g03233	05	43611962	43620246	Tsu03g01731	03	17667711	17672775	PCT