Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05498 ATGGGTGCTTCTCTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATTGTTAAATCCTATGAAACCAAACAGTACAAGAAGGGACTCAAAGCAGCCGATGCCATTTTGAAAAAGTTTCCAGATCATGGAGAAACTTTATCGATGAAGGGTTTGACATTAAATTGCATGGATCGTAAATCTGAAGCATACGAACTGGTTCGCCAAGGATTGAAGAATGACCTTAAGAGTCATGTTTGCTGGCATGTTTATGGTCTTCTCTATCGGTCCGACAGAGAATACAGGGAAGCAATCAAGTGCTATCGAAATGCACTAAGGATAGATCCTGACAACATTGAAATCTTACGTGATCTATCGCTCTTACAGGCACAAATGCGAGATTTATCCGGGTTTGTTGAGACGCGGCAACAACTTCTGACTCTCAAATCAAATCATCGCATGAACTGGATTGGATTTGCTGTTGCACATCATTTGAACTCTAATGCATCAAAAGCTATTGAAATTCTGGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGAATTGAGCATGGGGAAATGGTTTTATATAAGGTCTCTTTGTTAGAGGAATGTGGATTTTTTGAGAGAGCTTTTGAGGAGTTGCAGAAGAAGGAGTCAAAAATTGTTGACAAGCTTGGATATAAAGAACAAGAGGTTTCACTTTTAGTCAAGCTTGGTCGCTTAGAAGAAGCCGAGAAATTGTACCAGACACTGCTTTCCATGAATCCTGACAATTATAGATATTATGAAGGCCTTCAACGATGTGTTGGGTTATATTCAGAAAATGGCGATTTTTCTCCTGATGAAATAGATCGGTTAGATACCTTGTACAAAACACTTCGGCAGCAATTTAAGTGGTCATCTGCTGTCAAGaGAATACCACTAGATTTTCTTCAAGGTGATAGATTTCGAGAAGCAGCAGATAATTATATTAGGCCTCTCCTTACTAAGGGAGTTCCATCTCTATTCTCAGATCTCTCTTCTTTATACAATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGAGTTAGAGAATTCTATTAGGATGACTGGTCAATACCCTGGGAGGACGGAAAAAGAGCCCCCTTCAACTCTTATGTGGACTTTGTTCTTGTTGGCTCAGCATTATGACAGACGAGGCCAACATGAAATCGCACTTTCTAAAATCAACGAGGCTATAGAACACACTCCTACTGTCATTGATCTATACTCTGCCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGGTGATCGTTATGTTAATAGTGAATGTGTGAAACGCATGCTGCAGGCTGATCAGATGGTTTTGGCAGAAAAAACTGCCGTGCTATTCACAAAAGATGGGGATCAACACAACAACCTCCATGACATGCAGTGCATGTGGTACGAGCTTGCTTCTGCTGAAAGCTGCTTCCGCCAAGGGGATCTTGGACTATCTCTCAAAAAGTTCTTAGCAGTGGAGAAGCATTATGCAGATATTACTGAAGACCAATTTGATTTTCATTCATACTGCTTAAGGAAAATGACATTGCGTACATATGTGGAAATGCTTCAATTTCAAGACAAATTGCATTCGCATGCATATTTTCGTAAAGCAGCTGCTGGAGCTATTAGATGTTATATAAAATTGCACGATTCTCCCCCAAAGTCAACAGCTGAGGAGGATAATGAAATGTCTAAGTTGCTTCCTgctcaaaaaaagaaattgaagcaAAAACAGAGAAAGGCAGAAGCAAGAGctaaaaaaGCGGcagaagagaaaaatgaagaatCAAGTGCTAGTGGGACATCAAAGTCCGGGAAACGTCATACAAAACCCGTTGATCCAGATCCTCGAGGGGAAAAGTTGTTGCAGGTTGAAGATCCATTGTTGGAAGCCACAAAATACTTGAAGTTGCTGCAGAAGAATTCACCTGATTCGTTGGAGACACACTTGCTCTCCTTTGAATTATACATGAGAAAACAGAAGATTTTGCTAGCCTTTCAGGCTTTAAAACAATTATTGAGATTGGATGCTGAACACCCTGATTCTCATCGTTGCTTGATTAAATTTTTCCATAAAGTGGGATCCATGAATGCTCCCGTGACTGACAGTGAGAAACTCGTTTGGAGTGTCTTAGAAGCTGAGCGCCAAACTATAAGTCAGCTGCATGGAAAATCTCTGTTTGAGGCAAATAACCTTTTCCttgaaaaacatgaagGTTCTTTGATGCATAGAGCTGCTGTTGGAGAAATGATGTACATTTTAGATCCCAATAGAAGATCCGAGGTTGTCAAGTTGATTGAAGGGTCAACAAATAACCCTGTGCCAAGGTAA 2406 0.3982 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSNASKAIEILEAYEGTLEDDYPPENERIEHGEMVLYKVSLLEECGFFERAFEELQKKESKIVDKLGYKEQEVSLLVKLGRLEEAEKLYQTLLSMNPDNYRYYEGLQRCVGLYSENGDFSPDEIDRLDTLYKTLRQQFKWSSAVKRIPLDFLQGDRFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELENSIRMTGQYPGRTEKEPPSTLMWTLFLLAQHYDRRGQHEIALSKINEAIEHTPTVIDLYSAKSRILKHAGDLAAAAAFADEARCMDLGDRYVNSECVKRMLQADQMVLAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESCFRQGDLGLSLKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLQFQDKLHSHAYFRKAAAGAIRCYIKLHDSPPKSTAEEDNEMSKLLPAQKKKLKQKQRKAEARAKKAAEEKNEESSASGTSKSGKRHTKPVDPDPRGEKLLQVEDPLLEATKYLKLLQKNSPDSLETHLLSFELYMRKQKILLAFQALKQLLRLDAEHPDSHRCLIKFFHKVGSMNAPVTDSEKLVWSVLEAERQTISQLHGKSLFEANNLFLEKHEGSLMHRAAVGEMMYILDPNRRSEVVKLIEGSTNNPVPR 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05498 801 MobiDBLite consensus disorder prediction 608 622 - -
Tsu02g05498 801 SUPERFAMILY TPR-like 12 440 IPR011990 GO:0005515
Tsu02g05498 801 Gene3D - 505 725 - -
Tsu02g05498 801 Pfam N-terminal acetyltransferase A, auxiliary subunit 186 696 IPR021183 -
Tsu02g05498 801 Coils Coil 596 623 - -
Tsu02g05498 801 SMART tpr_5 223 256 IPR019734 GO:0005515
Tsu02g05498 801 SMART tpr_5 43 76 IPR019734 GO:0005515
Tsu02g05498 801 SMART tpr_5 380 413 IPR019734 GO:0005515
Tsu02g05498 801 SMART tpr_5 77 110 IPR019734 GO:0005515
Tsu02g05498 801 MobiDBLite consensus disorder prediction 593 646 - -
Tsu02g05498 801 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Tsu02g05498 801 MobiDBLite consensus disorder prediction 631 646 - -
Tsu02g05498 801 Gene3D - 2 503 - -
Tsu02g05498 801 PIRSF NAT_A 1 798 IPR021183 -
Tsu02g05498 801 PANTHER BNAC02G23120D PROTEIN 10 799 - -
Tsu02g05498 801 Pfam TPR repeat 84 123 - -
Tsu02g05498 801 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05498 Tsu-Chr2 63303145 63313586 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05498 K20792 - gmx:100818973 1407.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05498 02 63303145 63313586 Tsu02g05498 02 63303145 63313586 ECH
Tsu02g05498 02 63303145 63313586 Tsu06g00257 06 2121567 2138597 PCT