Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05360 ATGGctgtttttccaattttgttGGTGGTTCTCTTCTCTCTAATTTATGGCAATTATGTTATTCCCATTGAAGCAACCCACCATGTTTATAGAAATCTTCAAAGTTCATCTTTAGATTCCTCAAATCATCAACCTTATAGAACTGCTTATCACTTTCAACCTCACAAGAATTGGATAAATGACCCCAATGgACCAATGAGATATGGAGGATTTTATCATCTATTTTACCAATATAACCCTAAAGGTGCTGTTTGGGGAAATATTGTATGGGCCCATTCAGTATCAAAAGATCTTGTGAATTGGACACCATTGGATCATGCAATCCATCCATCCCAACCGTCAGATATAAAAGGTTGTTGGTCAGGATCAGCCACAATATTGCCAGGTGGCAAACCAGCAATTTTATACACAGGAATTAATCCAAATAATCATCAAGTACAAAATATAGCCATACCCAAAAATATGTCTGACCCATTACTTAGGGAGTGgaaaaaatcaccaaaaaatcCATTGATGGAACctactattaataataaaattaattcaagTTCATTTAGGGACCCAACTACTTCTTGGCTAGGAAAAGATGGGTATTGGAGGGTATTAATTGGTAGCAAAATAAATACTAAGGGTATGGCAATTATGtacaaaagtaaaaattttGTTAATTGGGTTGAAGCCAAACATCCCTTACATTCAGCTGAAGGAACAGGAATGTGGGAGTGTCCTGATTTTTTTCCAGTATTGAATAAGAAAAATACATTAACAATTGGTGTTGATACATCTATGATTGGTGATGATGTTAAACATGTGCTTAAGGTTAGTTTGGATGATACAAAACATGATCATTATTTGATTGGGACTTATGATACTACTAAGGATATATTTGTTCCTCAAAATGGATTTGAGGataataaatttgtattgaGATATGATTATGGAAAATATTATGcctcaaaaacattttttgatGATGAGAAGAATAGAAGGATTTTGTTGGGTTGGGTTAATGAATCCTCAAGTGTTGCTGATGATGTCAAGAAAGGATGGTCTGGAATCCATACTATTCCAAGGACTATCTGGCTACATAAATCAGGAAAACAATTAATACAGTGGCCAGTCAAGGAAATTGAAAATCTACGTATAAACCCAGTTAATTGGCCCACCAAGGTGATTAAGGGAGGTGAATTCATTCCAATTACTGGTGTTAATTCAGTACAGGCTGATGTTGAAATTTCATTTGAAGTGAAAGATTTTGGAAAAGCTGAAATATTGGACCATTGGATAGATCCTCAAATTTTATGTAGTCAAAAGGGTGCATCCAAAAAAGGAGGTGTTGGACCATTTGGTTTGCTAGTATTTGCTTCTCAAGGCATGCAAGAGTATACAGcagttttttttagaatattcaAATACCAACATAAGAACTTGGTTCTCATGTGCAGTGACCAAAGCAGGTCATCTTTGAATAAGGATAATGATATGACCACTTATGGGACTTTTGTGGATGTTGACCCTCTTCATGAAAAATTGTCACTAAGAACTTTGATTGATCATTCAGTAGTGGAGAGTTTTGGTGGAGAAGGAAGGGCATGCATCACAGCCAGAGTTTATCCCACATTAGCAATCCATGATAAAGCTATGCTATATGCTTTTAATAATGGAACTTCTGCAGTCAAGATTTCAAGAATGAGTGCTTGGAGCATGAAGAAAGCAAAAATCTATTGA 1728 0.3362 MAVFPILLVVLFSLIYGNYVIPIEATHHVYRNLQSSSLDSSNHQPYRTAYHFQPHKNWINDPNGPMRYGGFYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDHAIHPSQPSDIKGCWSGSATILPGGKPAILYTGINPNNHQVQNIAIPKNMSDPLLREWKKSPKNPLMEPTINNKINSSSFRDPTTSWLGKDGYWRVLIGSKINTKGMAIMYKSKNFVNWVEAKHPLHSAEGTGMWECPDFFPVLNKKNTLTIGVDTSMIGDDVKHVLKVSLDDTKHDHYLIGTYDTTKDIFVPQNGFEDNKFVLRYDYGKYYASKTFFDDEKNRRILLGWVNESSSVADDVKKGWSGIHTIPRTIWLHKSGKQLIQWPVKEIENLRINPVNWPTKVIKGGEFIPITGVNSVQADVEISFEVKDFGKAEILDHWIDPQILCSQKGASKKGGVGPFGLLVFASQGMQEYTAVFFRIFKYQHKNLVLMCSDQSRSSLNKDNDMTTYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACITARVYPTLAIHDKAMLYAFNNGTSAVKISRMSAWSMKKAKIY 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05360 575 SMART glyco_32 51 529 IPR001362 GO:0004553|GO:0005975
Tsu02g05360 575 CDD GH32_Fruct1-like 57 362 - -
Tsu02g05360 575 SUPERFAMILY Arabinanase/levansucrase/invertase 43 374 IPR023296 -
Tsu02g05360 575 SUPERFAMILY Concanavalin A-like lectins/glucanases 373 571 IPR013320 -
Tsu02g05360 575 Gene3D - 384 569 - -
Tsu02g05360 575 Gene3D Glycosyl hydrolase domain; family 43 56 383 IPR023296 -
Tsu02g05360 575 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 2 574 - -
Tsu02g05360 575 Pfam Glycosyl hydrolases family 32 N-terminal domain 51 373 IPR013148 -
Tsu02g05360 575 PANTHER CELL-WALL INVERTASE 2 574 - -
Tsu02g05360 575 Pfam Glycosyl hydrolases family 32 C terminal 377 568 IPR013189 -
Tsu02g05360 575 ProSitePatterns Glycosyl hydrolases family 32 active site. 51 64 IPR018053 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05360 Tsu-Chr2 62157060 62160540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05360 66 574 Glycoside Hydrolase AT3G13790 64.023 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05360 K01193 - gmx:100776791 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05360 02 62157060 62160540 Tsu08g00500 08 5163590 5173843 PCT