Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05323 ATGGGTGGTAGAGCTACTGATTCTGCTAGAGTTATGAAGTTCACAAAGGTTCTTTCTGGAACCATGGTTATATTAGACAAATTGCGCGAATTAGCTTGGAGTGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCAACTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGGAAGCGGCTCGAGTATCTTGATTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCAGATGATGAGATCAACATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTACCTGAAGTTCCCTTCTTCCAGCAACCACAAGTTCAGAAATCACTGGAGCGTATTCTTTACGCATGGGCCATTCGGCATCCCGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTCACaccattttttgttgttttcctATCAGAATACTTAGAAGGGAGCATAGATAATTGGACAATGTCCGATTTGTCTTCAGATAAAATCTCTAATGTAGAAGCTGACTGTTATTGGTGCCTTTCAAAATTGCTTGATGGTATGCAAGACCATTACACGTTTGCTCAACCAGGAATTCAAAGGCTTGTCTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAGCCATATGGAGAATCAGGGACTGGAGTTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTTCAACTTGTGACGCGCCTTTGGGATACATATCTAGCCGAAGGGGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTTACGTGGTCAGATGAAATTCAGAAGCTTGATTTTCAAGAGTTAGTAATGTTCCTTCAACGCCTTCCAACTCAGAACTGGACTGACCAGGAGCTCGAGATGGTCCTCTCTCGTGCATTTATGTGgcacagcatgttcaacaatTCTCCTAGCCATTTAGCTACCTAA 999 0.4114 MGGRATDSARVMKFTKVLSGTMVILDKLRELAWSGVPDYMRPTVWRLLLGYAPTNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVPFFQQPQVQKSLERILYAWAIRHPASGYVQGINDLVTPFFVVFLSEYLEGSIDNWTMSDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMENQGLEFLQFAFRWFNCLLIREIPFQLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDEIQKLDFQELVMFLQRLPTQNWTDQELEMVLSRAFMWHSMFNNSPSHLAT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05323 332 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 3 329 - -
Tsu02g05323 332 Gene3D - 12 63 - -
Tsu02g05323 332 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 71 196 - -
Tsu02g05323 332 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 198 320 IPR035969 -
Tsu02g05323 332 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 12 222 IPR035969 -
Tsu02g05323 332 Pfam Rab-GTPase-TBC domain 39 284 IPR000195 -
Tsu02g05323 332 ProSiteProfiles TBC/rab GAP domain profile. 35 262 IPR000195 -
Tsu02g05323 332 SMART tbc_4 32 288 IPR000195 -
Tsu02g05323 332 Gene3D - 197 332 - -
Tsu02g05323 332 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05323 Tsu-Chr2 61887613 61891278 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05323 K20360 - gmx:100776049 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05323 02 61887613 61891278 Tsu02g05323 02 61887613 61891278 ECH
Tsu02g05323 02 61887613 61891278 Tsu02g02281 02 23018976 23024710 PCT