Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02281 atgaacAAACCTCCACGAGAAGATCATGAACGTAACAACACtgttactactactactactactctCGACTCCAGATTCAGCCAAACTCTCAAAAATGTTCAAGGGTTACTGAAAGGTCGTAGCATGCCTGGTAAAGTATTGATGAGCAGAAGGTCAGAACCTTCTGATAACTCTGACTTAAAGGTATCCTCAACGTATTTCAAAAGGAGTTTCTCACACAATGATGCTGGCACAAGTGATCACATATCTGGTGCAGTAGAGGAGGAAGTTCAGAGTACAAGTAAACCAATCAGCACTGCTAATGTTAGTAGGTTAAAAATATCAACCTCCTATGGGGGAAGGGAGAACTTATCTGACGACTTCCACAAGTATAACATGGGTGCTAGAGCTACCGATTCGGCAAAAGTTACAAAGTTCACTAAGGTGCTTTCTGGAACAGTGGTTATATTAGACAAATTGCGTGAATTAGCTTGGAGTGGTGTTCCAGACTACATGCGTCCGAAAGTGTGGAGACTCCTCTTGGGATATGAACCACCTAATTCAGATAGAAAGGAGGGAGTTTTGAGAAGGAAGCGTGGAGAGTATCTTGATTGTATTTCTCAGTATTATGATATTCCTGATTCAGAACGTTCGGATGACGAGGTCAACATGCTTCGCCAGATTGCCGTTGATTGTCCAAGAACTGTACCTGATGTTCCTTTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTCGTTACACcgtttttagttgtttttatatCAGAATACTTGGAAGGGGGTATAGATGATTGGTCCATGTCTGATTTATCATCAGACAAAATCTCTAATATAGAGGCTGACTGCTACTGGTGTTTGACAAAGTTGCTTGATGGTATGCAAGACCATTACACATTTGCTCAACCTGGAATTCAGAGgcttgtttttaaattaaaggaATTGGTCAGGAGGATCGACGAGCCTGTTACACAACATATAGATGATCAGGGActtgaatttcttcaatttGCTTTCCGCTGGTTCAACTGTCTTCTGATCCGTGAGATACCCTTCAATCTCATCACACGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTCGTGTATATATTTGCTAGTTTTCTTCTAACGtgGTCAGACAAGCTGCAGAACTTGGAATTCCAGGAGTTGGTAATGTTCCTTCAACACCTTCCAACTCAGAAATGGACTCACCAGGACCTCGAGATGGTGCTTTCCCGGGCATTTATGTGGCATAGCATGTTCAACAACTCTCCAAGTCATTTCGCTAGCTGA 1374 0.4039 MNKPPREDHERNNTVTTTTTTLDSRFSQTLKNVQGLLKGRSMPGKVLMSRRSEPSDNSDLKVSSTYFKRSFSHNDAGTSDHISGAVEEEVQSTSKPISTANVSRLKISTSYGGRENLSDDFHKYNMGARATDSAKVTKFTKVLSGTVVILDKLRELAWSGVPDYMRPKVWRLLLGYEPPNSDRKEGVLRRKRGEYLDCISQYYDIPDSERSDDEVNMLRQIAVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFISEYLEGGIDDWSMSDLSSDKISNIEADCYWCLTKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVTQHIDDQGLEFLQFAFRWFNCLLIREIPFNLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQNLEFQELVMFLQHLPTQKWTHQDLEMVLSRAFMWHSMFNNSPSHFAS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02281 457 Pfam Rab-GTPase-TBC domain 164 408 IPR000195 -
Tsu02g02281 457 MobiDBLite consensus disorder prediction 14 35 - -
Tsu02g02281 457 ProSiteProfiles TBC/rab GAP domain profile. 160 387 IPR000195 -
Tsu02g02281 457 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 323 445 IPR035969 -
Tsu02g02281 457 Gene3D - 133 186 - -
Tsu02g02281 457 Gene3D - 322 457 - -
Tsu02g02281 457 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 8 454 - -
Tsu02g02281 457 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 8 454 - -
Tsu02g02281 457 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 140 347 IPR035969 -
Tsu02g02281 457 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 197 321 - -
Tsu02g02281 457 SMART tbc_4 157 413 IPR000195 -
Tsu02g02281 457 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02281 Tsu-Chr2 23018976 23024710 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02281 K20360 - gmx:100819281 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05323 02 61887613 61891278 Tsu02g02281 02 23018976 23024710 PCT