Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05288 ATGTTGGTGCGAAACAGTGTCTCCTTCTTCTCCTCGAAAACCAATCCATACCAAGTGTCCCAATTTCATGTCTCTACGAGGAAAAACACACCCAAAAACACTTCACAACTTCAACCAAACAAGCACATATTCCAAATTCAAGACAAAAAAACGTTTGGTTTGAGTTTGACTAAGATTGAAGGATCTGCATACACAAAAACAGTTGAATTGGGTCAATTCAATAAATGTCCTGCCAATTGGGAAAATGTGCTTGAAGGGATTCGCAAAATGAGTTATTCCGATGATGACACTATGCGAGATTTGGAAGATAACGGTGATGATATTCTGCCTCCTAAGGAAAGACGATTTGCTGTCCTGGCATCTTCTCTTTTATCGAGCCAAACTAAGGAGCATGTTACTCGTGGAGCAACACAACGGCTTCGTCAAAACGGTTTTCTTACTGCTGATGCAATCAACAAAGCTGATGaagaaatcatcaaaaaattgatttacCCTGTTGGGTTTTATATAAGAAAAGCCAGTAACTTGAAGAAAATTGCTCATATTTGTCTCACGAAGTATGATGGCGACATACCTAACTCAATTGAGGAACTACTCTCGCTTCCAGGCGTAGGTCCTAAGATTGCTCATTTGGTTATGATTATTGCATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATCTGCAATCGTCTTGGATGGGTTTCGAAATCAGGCACAAAACAGAGAACTTCAATaccagaagaaacaagaaagGCGCTGGAACAGTGGCTTCCGAGGGAAGAATGGGTTCCAATAAATCCACTTTTGGTAGGATTTGGAAGGACGATATGTACCCCTTTACGGCCTCGCTGTGGAGAGTGTGGTGTAAGTAGGTTCTGTCCATCCGCGTTCAAGGAGACTTCAAGTTCATCTTCCAGGTCCAATAAATCTCGATTGAACATGGAACCCGGATCAAGTTGA 975 0.4041 MLVRNSVSFFSSKTNPYQVSQFHVSTRKNTPKNTSQLQPNKHIFQIQDKKTFGLSLTKIEGSAYTKTVELGQFNKCPANWENVLEGIRKMSYSDDDTMRDLEDNGDDILPPKERRFAVLASSLLSSQTKEHVTRGATQRLRQNGFLTADAINKADEEIIKKLIYPVGFYIRKASNLKKIAHICLTKYDGDIPNSIEELLSLPGVGPKIAHLVMIIAWNNVQGICVDTHVHRICNRLGWVSKSGTKQRTSIPEETRKALEQWLPREEWVPINPLLVGFGRTICTPLRPRCGECGVSRFCPSAFKETSSSSSRSNKSRLNMEPGSS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05288 324 Pfam HhH-GPD superfamily base excision DNA repair protein 121 256 IPR003265 GO:0006284
Tsu02g05288 324 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 282 298 IPR004035 -
Tsu02g05288 324 CDD ENDO3c 116 278 IPR003265 GO:0006284
Tsu02g05288 324 ProSitePatterns Endonuclease III family signature. 189 218 IPR004036 -
Tsu02g05288 324 SMART endo3end 124 280 IPR003265 GO:0006284
Tsu02g05288 324 MobiDBLite consensus disorder prediction 301 324 - -
Tsu02g05288 324 Pfam Helix-hairpin-helix motif 186 213 IPR000445 GO:0003677
Tsu02g05288 324 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 58 315 - -
Tsu02g05288 324 Gene3D - 215 304 IPR023170 -
Tsu02g05288 324 SUPERFAMILY DNA-glycosylase 109 305 IPR011257 GO:0003824|GO:0006281
Tsu02g05288 324 SMART ccc3 281 301 IPR003651 GO:0051539
Tsu02g05288 324 Hamap Endonuclease III-like protein 1 [NTHL1]. 76 304 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Tsu02g05288 324 Gene3D Hypothetical protein; domain 2 105 214 - -
Tsu02g05288 324 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 58 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05288 Tsu-Chr2 61668251 61671033 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05288 K10773 - zju:107421847 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05288 02 61668251 61671033 Tsu02g05288 02 61668251 61671033 ECH
Tsu02g05288 02 61668251 61671033 Tsu02g02232 02 22364624 22370526 PCT