LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g02232	ATGCTTCCCTTTCCTGGGTTTGTTTGGGGAAGTTGGAGAATCAAAGTTGTGATCATGTCTTCTCATTCCTTTCGCAAATCTCCTCTCTCCACCGTCAAACCCTCCACCTCCGGAGTTCATGTCTATGTCAGAAGAAACAAAAGACCCAAAGGAATCACCGCCACCACTCACAAAAAGGTTGGTCTGCCTGATATTGAAGACTTTGCATACAAAGGACCAAATGAACTGACTCGGTGCATAAAATCAGAAGTGAGCTCAGATGTGAATGTGACTCCAACGGAAAGTGAAATTGTTTCTACAACACATAGCATTGAATCACCTGCACACTGGGAAGAGACGCTTGAAGGTATTCGCAAAATGAGATGTTCTGCAGATGCACCGGTAGACACTATGGGCTGTGAGAAAGCTGGTTCTACACTACCTCCTAAGGAAAGAAGATTTGCTGTCCTGGTATCATCTCTTTTATCAAGCCAAACCAAGGATCATGTTAATCATGgAGCAATTCAACGTCTTCTTCAAAATGATCTGCTTACTCCTGATGCAATCAACAATGCTGATGAAGAAACTATCAAAAAGTTGATTTACCCAgTTGGGTTTTATACAAGAAAAGCCACTAACatgaaaaaaattgcaaatatttGTCGCATGAAGTATGGCGGTGACATACCTAGCACACTTGAGCAACTACTTTTACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGCATGGAACAATGTTCAAGGGATATGTGTAGATACTCATGTTCACCGCATTTGCAATCGACTAGGATGGGTGTCAAGATTGGGCACAAAACAGAAAACGTCGACACCTGAAGAGACAAGAGTGTCACTGCAAAGGTGGCTTCCAAGGGAAGAATGGGATCCAATAAATCCTCTATTGGTAGGATTTGGCCAGACAATTTGTACGCCTCTAAGACCTCGTTGCGGAGAATGCGGTATAACTGAGTTGTGTCCATCAGCATTCAAAGAGGCCTCAGATTCAAGTCCAGTTTCCAAGTCTACAAAGTCCCGAAGGAACAAGAAGGTTTAA	1065	0.4225	MLPFPGFVWGSWRIKVVIMSSHSFRKSPLSTVKPSTSGVHVYVRRNKRPKGITATTHKKVGLPDIEDFAYKGPNELTRCIKSEVSSDVNVTPTESEIVSTTHSIESPAHWEETLEGIRKMRCSADAPVDTMGCEKAGSTLPPKERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNDLLTPDAINNADEETIKKLIYPVGFYTRKATNMKKIANICRMKYGGDIPSTLEQLLLLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTSTPEETRVSLQRWLPREEWDPINPLLVGFGQTICTPLRPRCGECGITELCPSAFKEASDSSPVSKSTKSRRNKKV	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g02232	354	Gene3D	-	252	329	IPR023170	-
	Tsu02g02232	354	PANTHER	ENDONUCLEASE III-LIKE PROTEIN 1	53	349	-	-
	Tsu02g02232	354	Hamap	Endonuclease III-like protein 1 [NTHL1].	106	335	IPR030841	GO:0003906\|GO:0005634\|GO:0006281\|GO:0006285\|GO:0019104
	Tsu02g02232	354	Pfam	Helix-hairpin-helix motif	217	245	IPR000445	GO:0003677
	Tsu02g02232	354	SMART	ccc3	312	332	IPR003651	GO:0051539
	Tsu02g02232	354	SMART	endo3end	155	311	IPR003265	GO:0006284
	Tsu02g02232	354	CDD	ENDO3c	147	309	IPR003265	GO:0006284
	Tsu02g02232	354	MobiDBLite	consensus disorder prediction	334	354	-	-
	Tsu02g02232	354	ProSitePatterns	Endonuclease III family signature.	220	249	IPR004036	-
	Tsu02g02232	354	PANTHER	ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC	53	349	-	-
	Tsu02g02232	354	SUPERFAMILY	DNA-glycosylase	118	343	IPR011257	GO:0003824\|GO:0006281
	Tsu02g02232	354	Pfam	HhH-GPD superfamily base excision DNA repair protein	151	280	IPR003265	GO:0006284
	Tsu02g02232	354	Gene3D	Hypothetical protein; domain 2	142	251	-	-
	Tsu02g02232	354	ProSitePatterns	Endonuclease III iron-sulfur binding region signature.	313	329	IPR004035	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g02232	Tsu-Chr2	22364624	22370526	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g02232	K10773		-	gmx:100818398	504.597

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu02g05288	02	61668251	61671033	Tsu02g02232	02	22364624	22370526	PCT