Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05217 atgttgtcTGAATTGGGTAGGAGACCAGTGATTGGTGGTAACGAGGGTTCATTTGGTGATGAATTTGAGAAGGAAATAGGGATGTTGCTTCGTGATCAACGACGACATGAGGTTGATGATCATGAACCTGAGCTTAATTTGTATAGGAGTGGATCAGCTCCTCCAACTGTGGAGGGTTCATTGAGTGCAGTTGGAGGGTTGTTTGGAGGTGGTTCTACGGCTGCTGCAGCTGCGATTTCGGAGTTTTCTGGGAATGGTTTTGGTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTTCATATTATTACTCTAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTGTTATCAAAGGAGGATTGGAGGTTTACACAGAGACTAAAAGGTGGAACTTCTGTAGTTGGTGGAATTGGTGATAGGAGGAAAGTCAATGGAGCTGATGATAATGGTGGTGGTAGATCAGTGTTTGCCACGCCTCCGGGATTTAATAATAGGAAAAGAGAGAGTGAGGTGGTGGTTGATGAAAAAGCTAGAGGTTCTGCTGAATGGGGTGGTGGTGATGGACTCATTGGTTTGCCAGGACTAGGTCTTGGGACCAAACAAAAGAGCCTTGCTGAAATTTTTCAGGATGACTTGGGACGTAACACCTCTGTCACTGGCTTTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGAAAATGTTGAGACTGCATCTTCTGCAGAAGCAGAGCTGGCTCATTTGCGCCATGATTCCCCAGCTACTGATGGCTTAAGGTCTGGATCAAATGTTCAAGGGTCATCTGCATCCCAAACTGTTGGCTCGCAAGCCTCATATTCTTATGCTGCTGCACTTGGGGGTTCTTCCCTGTCACGAAGCACTACTCCTGATCCACAACATATTGCCAGGGCTCCCAGTCCTTGCCCCACACCTATTGGTAGTGGGAGAGTTTCTGCTGCCGAGAAGAGAGGTATTACCAGTCCTGAAGCATTTAATGATGTTTCATCTGGCATCAATGGGTCTGCAGATATTATGGCTGCAATGTCCGGCATGAAATTGTCAGCAGATGATGGGTTAGATGGTGATAACCATTTCCAATCACAGGTTGAGTCAGATGTTAATAATTATCAGAGATATCTTTTTGGTATGCAAAGTGGTCAGGATCATGGCAAGCAGAATTCATATTTAAAGAAGTCTGAATCAGGACACTTGCAGAAAACTGTGCACTCGGATTCAGGTAAGAGAAGTGGTTCAGACATGAAAAATCCTACCTTCGATAGGCATGCTGAGATGCAAAAGTCCGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTGGCTCCCCTTATAGTGGTGGAGGTGGTTTTCCTGCACAATACCAGCCTTCAGATCGTCCCAATTCACCATTTAATAACTATGGCCCGAGTGGTGGATATGGTGGAAATCCAGCGGTGGCATCCTTTATGGCTAACCAACTTGGAACTGGTAATCTGCCACCCCTATTTGAAAATGTTGCTGCAGCATCAGCCATGGCATCTCCTGGAATGGACTCTAGAATCCTTGGAGGTGGTTTGCCCTCAGGAGTTGCTTCTCCCTCCGATGTGCATGTACTCAGTAGAATGGGAAATCAAATTGCAGGTGGTGGTGCTCTTCAGACTCCTTATGTTGATCCGATGTATCTTCAGTATACGAGGACACCTGAGTATGCTGCAGCACAACTTGCTGCTCTTAATGACCCATCTGTGGACAGGAATTACTTGGGAAACTCATACATGAATATACTTGAGCTTCAGAAAGCATATCTTGGATCTCTACTTTCACCTCAGAAACAATACAATGTTCCCCTGGGTGGAAAATCTGGTGGTTCCAACCATCATGGTTATTATGGAAATCCTGCGTATGGCGTTGGCTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTTTATCCAGTTCTCCAGTTGGGTCTTGCAGTCCTATTAGGCACAATGACCTGAATATGCATTTTGCTTCTGGAATGAGGAATGTAGCCGGGGTCACGGGACCATGGCACCTAGATGCTGGAAATTTAGATGAAAACTTTGCTTCGTCTCTGCTGGAAGagtttaaaaacaataaaacaaagtGTTTTGAGCTTGCTGAGATTTCTGGGCATGTTGTTGAATTCAGTGCTGATCAATATGGGAGCCGGTTTATTCAACAAAAGCTTGAAGCAGCAACtactgaagaaaaaaatatggtttATCAGGAAATAACACCACATGCTCTTGCTTTGATGACTGATGTCTTTGGGAATTATGTGGTTCAGAAGTTTTTTGAGCATGGACTTGCAACCCAGAGAAGAGAGTTAGCCAACAAGCTTTATGGCCATGTTCTGACTCTTAGCCTTCAAATGTATGGCTGTCGAGTCATCCAGAAGGCCATAGAAGTTGTTGATCTGGACCAGAAGATTAAAATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGAGATCAGAATGGCAACCATGTTATTCAGAAGTGTATTGAATGCGTACCTGAAGAAGCAATTGACTTCATTATCTCAACTTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTACTAGAGCACTGCGAAGACCCTAACACACAACAGAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTATGGCAACTATGTCGTCCAGCATGTGCTTGAGCATGGGAAACCTCATGAGCGTTCTACAATTATCAAGGAATTAGCAGGAAATATAGTTCAAATGAGCCAGCAGAAGTTTGCCTCTAATGTTGTGGAGAAGTGTTTGACCTTTGGAGGTCCTGCTGAACGTCTATTGCTTGTAAATGAGATGCTTGGCACCACGGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAGTTTGCCAATTATGTCGTACAAAAGGTGCTGGAGACTTGCGATGACCAACAACGTGAGCTAATTCTTTCTCGAATTAAAGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCATATCGTCGCTCGTGTAGAGAAACTTGTTGCTGCTGGAGAGAGGAGAATTGCTGCTCAGTCTCCTCATACTGCTTAG 3159 0.4375 MLSELGRRPVIGGNEGSFGDEFEKEIGMLLRDQRRHEVDDHEPELNLYRSGSAPPTVEGSLSAVGGLFGGGSTAAAAAISEFSGNGFGSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFTQRLKGGTSVVGGIGDRRKVNGADDNGGGRSVFATPPGFNNRKRESEVVVDEKARGSAEWGGGDGLIGLPGLGLGTKQKSLAEIFQDDLGRNTSVTGFPSRPASRNAFDENVETASSAEAELAHLRHDSPATDGLRSGSNVQGSSASQTVGSQASYSYAAALGGSSLSRSTTPDPQHIARAPSPCPTPIGSGRVSAAEKRGITSPEAFNDVSSGINGSADIMAAMSGMKLSADDGLDGDNHFQSQVESDVNNYQRYLFGMQSGQDHGKQNSYLKKSESGHLQKTVHSDSGKRSGSDMKNPTFDRHAEMQKSAVSPNNSYFKGSPGSPYSGGGGFPAQYQPSDRPNSPFNNYGPSGGYGGNPAVASFMANQLGTGNLPPLFENVAAASAMASPGMDSRILGGGLPSGVASPSDVHVLSRMGNQIAGGGALQTPYVDPMYLQYTRTPEYAAAQLAALNDPSVDRNYLGNSYMNILELQKAYLGSLLSPQKQYNVPLGGKSGGSNHHGYYGNPAYGVGLSYPGSPMANSLSSSPVGSCSPIRHNDLNMHFASGMRNVAGVTGPWHLDAGNLDENFASSLLEEFKNNKTKCFELAEISGHVVEFSADQYGSRFIQQKLEAATTEEKNMVYQEITPHALALMTDVFGNYVVQKFFEHGLATQRRELANKLYGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEEAIDFIISTFFDQVVTLSTHPYGCRVIQRVLEHCEDPNTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGNIVQMSQQKFASNVVEKCLTFGGPAERLLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPHTA 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05217 1052 SUPERFAMILY ARM repeat 700 1034 IPR016024 -
Tsu02g05217 1052 CDD Pumilio 720 1033 IPR033712 GO:0003723
Tsu02g05217 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 717 752 IPR001313 GO:0003723
Tsu02g05217 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 970 1011 IPR001313 GO:0003723
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 254 275 - -
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 386 479 - -
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 216 238 - -
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 290 338 - -
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 404 430 - -
Tsu02g05217 1052 SMART pum_5 898 933 IPR001313 GO:0003723
Tsu02g05217 1052 SMART pum_5 934 969 IPR001313 GO:0003723
Tsu02g05217 1052 SMART pum_5 976 1011 IPR001313 GO:0003723
Tsu02g05217 1052 SMART pum_5 825 860 IPR001313 GO:0003723
Tsu02g05217 1052 SMART pum_5 717 752 IPR001313 GO:0003723
Tsu02g05217 1052 SMART pum_5 861 897 IPR001313 GO:0003723
Tsu02g05217 1052 SMART pum_5 789 824 IPR001313 GO:0003723
Tsu02g05217 1052 SMART pum_5 753 788 IPR001313 GO:0003723
Tsu02g05217 1052 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 697 1037 IPR033133 GO:0003723
Tsu02g05217 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 825 860 IPR001313 GO:0003723
Tsu02g05217 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 753 788 IPR001313 GO:0003723
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 140 165 - -
Tsu02g05217 1052 Gene3D - 697 1043 IPR011989 -
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 464 478 - -
Tsu02g05217 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 934 969 IPR001313 GO:0003723
Tsu02g05217 1052 Pfam Nucleic acid binding protein NABP 305 716 IPR012940 -
Tsu02g05217 1052 Pfam Pumilio-family RNA binding repeat 836 859 IPR001313 GO:0003723
Tsu02g05217 1052 Pfam Pumilio-family RNA binding repeat 721 755 IPR001313 GO:0003723
Tsu02g05217 1052 Pfam Pumilio-family RNA binding repeat 865 900 IPR001313 GO:0003723
Tsu02g05217 1052 Pfam Pumilio-family RNA binding repeat 793 826 IPR001313 GO:0003723
Tsu02g05217 1052 Pfam Pumilio-family RNA binding repeat 904 935 IPR001313 GO:0003723
Tsu02g05217 1052 Pfam Pumilio-family RNA binding repeat 938 972 IPR001313 GO:0003723
Tsu02g05217 1052 Pfam Pumilio-family RNA binding repeat 757 788 IPR001313 GO:0003723
Tsu02g05217 1052 Pfam Pumilio-family RNA binding repeat 984 1013 IPR001313 GO:0003723
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 435 449 - -
Tsu02g05217 1052 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1045 - -
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 216 241 - -
Tsu02g05217 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 789 824 IPR001313 GO:0003723
Tsu02g05217 1052 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1045 - -
Tsu02g05217 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 898 933 IPR001313 GO:0003723
Tsu02g05217 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 861 897 IPR001313 GO:0003723
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 386 403 - -
Tsu02g05217 1052 MobiDBLite consensus disorder prediction 258 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05217 Tsu-Chr2 61108842 61114293 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05217 K17943 - gmx:100818836 1660.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05217 02 61108842 61114293 Tsu02g05217 02 61108842 61114293 ECH
Tsu02g05217 02 61108842 61114293 Tsu02g02123 02 20886118 20924624 ECH