Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02123 atgTTGTCTGAGTTGGGAAGAAGACCAATGATTGGCAATAAGGAAGGGCGTTATGGTGATGATTTGGAGAAGGAAATAGGGATGTTGCTTCGCGAGCAACGGAGACAAGAAGGCGATGATCGCGAAAGGGAGCTTAATATATTTAGGAGTGGATCAGCTCCTCCAACTGTGGAGGGTTCTTTGAATGCTGTTGGAGGGTTGTTTGGCGGTGGTGGTGTTGGTGGTGGTGTTAGTGCTGGTTTTTCTGATTTTCATGGGAATCAAGATGTGAATGGGATTGTATCTGAGGAGGAGCTTAGGTCTGATCCAGCTTATCTTCAATACTATTATTCCAATGTGAATTTGAACCCTAGGCTTCCACCGCCCTTGTTGTCTAAGGAAGATTGGAGGTTTCAACAAAGACTTAAAGGTGGAACATCAGTTGTAGGTGGAATTGGAGATAGGAGGAAGGGTAACATGACTGATGATAATGGTGGTAGGTCAATGTTTGCCACGCCGCCGGGTTTTAACTTTCGGAAGCAAGAAAGGAATGAGGtggaaaatgaaaaaacaagagGTTCTGGTGAATGGGGTGGTGATGGTTTGATTGGTTTGCCTGGCTTGGGACTTAGGACCAAACAAAAGAGCCTTGCTGAAATTTTTCAGGATGATATGGAGCGTAACACACCTGTCACAGGCCTTCCTTCTCGTCCAGCAAGTCGTAATGCATTTGATGAAAATGTTGATGTAATAAGTACTTCTGAAGCTGAGCTGTCTCATGCAACACAAAATATTGGTTTGCCAACTTCATATTCTTACGCTGCTGCACTAGGAGGATCTTCATTGTCAAGAAGCACTACTCCTGATCCGCAACATATTGCTAGGGCTCCCAGTCCATGCCTCACACCTATTGGTGGAGGAAGAAGTGCTGCTTCTGACAAGAGAGGCATTGTCAGTCCGGATGCATTTAACGGGGTTTCATCTGGCAAGAATGAGTCGGCAGATCTTCTGAATGCGTTATCAGGGATGAACTTGTCAGCAGATGACGGAAACCATTTGCCATCACAGATTGAATCAGATGTCGATAATCATCAGAGGTACCTTTTTGGTATGCAGGGTGGTCAAGACCACGGCAAGCAACATCCTTATCTAAAAAGATCTGAATCAGGGCATATGCAGAGTTCAATTAAGAACAGTAGGAGTGGGTCGGACCTCAATAATATATCCCTGCAAAGGCAGGTTGAGCTACAAAACTCTACTGCTCCTGCGAATAACTCGTATTTCAAAGGATCACCTACCTCGCATTTTAGTGGAGGTAATTTGCCAGCTCAACAGTACCAGTCTTTAGATGGTATGAATTCGTCATTTACTAACTATGGAGTAGGTGGTTATGCCGGAAATCCAGCACTGACATCCTTGATGACTAACCAATATGGCACCAGTAATGTGCCACCCCTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCATCGCCTGGAATGGACTCAAGAATTCTTGGAGCTGATGCTGGCTTTGGATCGGGAGTGGTGGCGTGTCACTCTCTTGGTCGGATGGGAAATCAAATTGCAGGTGGTGCTCTTCAAGCTCCGTTTGTTGATCCGATGTATCTTCAGTACATGAGGACATCAGAGTATGCTGCAGCACAACTTGCTGCTCTTAACGACCCTTCTGTGGACAGGAACTACTTAGGTAATTCATACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGATCTGTCCTCTCGCCTAAGTCGCAATACAACGTACCATTGGGTGGTAAATCAGGCAACTCCAATCACCATGGTTATTATGGAAATCAGGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCCGGTTCTCCGGTTGGTTCTGGAAGTCCTATTAGGCACAATGATCTGAACAACATGCGGTTTGCTTCTGGAATGAGGAACTTAGCTGGGGTCATGGGACCTTGGCATCTAGATGCTGGGAACATAGATGAAAGCTTCGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAACAAAGCCAAGTGTTTTGAGCTTGCTGAAATTGCCGGTCATGTCGTTGAATTCAGTGCTGATCAATATGGAAGCCGATTTATTCAACAGAAGCTTGAAACAGCTACtacagaagaaaaaaacatgGTTTATCAGGAGATCATGCCACATGCTCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAGAAGTTTTTTGAGCATGGGCTTGCACCCCAGAGAAGAGAATTAGCCAACAAGCTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGGGTCATCCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAAATAGAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGTGTCCCTGAAGATGCAATCGACTTTATCATTTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGTCGTGTGATACAGAGAGTACTGGAGCACTGCGAAAACCCTACAACACAGCAAAAAGTTATGGATGAGATTTTAGCAGCTGTTAGCATGTTAGCACAGGATCAGTATGGAAACTACGTTGTTcagCATGTACTGGAACATGGAAAGCCTCACGAGCGTTCTACTATAATAAAGGAGTTAGCTGGGAGGATAGTTCAAATGAGTCAACAAAAGTTTGCCTCCAATGTTGTGGAGAAATGCTTGACCTTCAGTGGTCCTTCAGAACGCCAAATACTAGTCAGTGAGATGCTTGGAACCACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAGTTTGCAAACTATGTTGTCCAAAAGGTGCTGGAAACATGTGACGACCATCAACAGAAACTTGTTGCTGCTGGAGAGAGAAGAATTGCTGCACAGACTCCTCAACCTGCTTAG 2991 0.4366 MLSELGRRPMIGNKEGRYGDDLEKEIGMLLREQRRQEGDDRERELNIFRSGSAPPTVEGSLNAVGGLFGGGGVGGGVSAGFSDFHGNQDVNGIVSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGTSVVGGIGDRRKGNMTDDNGGRSMFATPPGFNFRKQERNEVENEKTRGSGEWGGDGLIGLPGLGLRTKQKSLAEIFQDDMERNTPVTGLPSRPASRNAFDENVDVISTSEAELSHATQNIGLPTSYSYAAALGGSSLSRSTTPDPQHIARAPSPCLTPIGGGRSAASDKRGIVSPDAFNGVSSGKNESADLLNALSGMNLSADDGNHLPSQIESDVDNHQRYLFGMQGGQDHGKQHPYLKRSESGHMQSSIKNSRSGSDLNNISLQRQVELQNSTAPANNSYFKGSPTSHFSGGNLPAQQYQSLDGMNSSFTNYGVGGYAGNPALTSLMTNQYGTSNVPPLFENVAAASAMASPGMDSRILGADAGFGSGVVACHSLGRMGNQIAGGALQAPFVDPMYLQYMRTSEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSVLSPKSQYNVPLGGKSGNSNHHGYYGNQAYGVGLSYPGSPMANSGSPVGSGSPIRHNDLNNMRFASGMRNLAGVMGPWHLDAGNIDESFASSLLEEFKSNKAKCFELAEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAPQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIISTFFDQVVTLSTHPYGCRVIQRVLEHCENPTTQQKVMDEILAAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGRIVQMSQQKFASNVVEKCLTFSGPSERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQQKLVAAGERRIAAQTPQPA 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02123 996 ProSiteProfiles Pumilio RNA-binding repeat profile. 906 941 IPR001313 GO:0003723
Tsu02g02123 996 CDD Pumilio 690 982 IPR033712 GO:0003723
Tsu02g02123 996 SMART pum_5 797 832 IPR001313 GO:0003723
Tsu02g02123 996 SMART pum_5 833 869 IPR001313 GO:0003723
Tsu02g02123 996 SMART pum_5 948 982 IPR001313 GO:0003723
Tsu02g02123 996 SMART pum_5 870 905 IPR001313 GO:0003723
Tsu02g02123 996 SMART pum_5 761 796 IPR001313 GO:0003723
Tsu02g02123 996 SMART pum_5 906 941 IPR001313 GO:0003723
Tsu02g02123 996 SMART pum_5 725 760 IPR001313 GO:0003723
Tsu02g02123 996 SMART pum_5 689 724 IPR001313 GO:0003723
Tsu02g02123 996 MobiDBLite consensus disorder prediction 380 397 - -
Tsu02g02123 996 ProSiteProfiles Pumilio RNA-binding repeat profile. 797 832 IPR001313 GO:0003723
Tsu02g02123 996 ProSiteProfiles Pumilio RNA-binding repeat profile. 870 905 IPR001313 GO:0003723
Tsu02g02123 996 MobiDBLite consensus disorder prediction 140 169 - -
Tsu02g02123 996 ProSiteProfiles Pumilio RNA-binding repeat profile. 689 724 IPR001313 GO:0003723
Tsu02g02123 996 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 669 996 IPR033133 GO:0003723
Tsu02g02123 996 ProSiteProfiles Pumilio RNA-binding repeat profile. 725 760 IPR001313 GO:0003723
Tsu02g02123 996 MobiDBLite consensus disorder prediction 275 308 - -
Tsu02g02123 996 MobiDBLite consensus disorder prediction 362 397 - -
Tsu02g02123 996 Gene3D - 669 993 IPR011989 -
Tsu02g02123 996 PANTHER PUMILIO HOMOLOG 1-RELATED 36 981 - -
Tsu02g02123 996 SUPERFAMILY ARM repeat 672 982 IPR016024 -
Tsu02g02123 996 Pfam Nucleic acid binding protein NABP 288 688 IPR012940 -
Tsu02g02123 996 ProSiteProfiles Pumilio RNA-binding repeat profile. 942 983 IPR001313 GO:0003723
Tsu02g02123 996 ProSiteProfiles Pumilio RNA-binding repeat profile. 833 869 IPR001313 GO:0003723
Tsu02g02123 996 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 981 - -
Tsu02g02123 996 Pfam Pumilio-family RNA binding repeat 956 980 IPR001313 GO:0003723
Tsu02g02123 996 Pfam Pumilio-family RNA binding repeat 837 872 IPR001313 GO:0003723
Tsu02g02123 996 Pfam Pumilio-family RNA binding repeat 876 907 IPR001313 GO:0003723
Tsu02g02123 996 Pfam Pumilio-family RNA binding repeat 910 944 IPR001313 GO:0003723
Tsu02g02123 996 Pfam Pumilio-family RNA binding repeat 765 798 IPR001313 GO:0003723
Tsu02g02123 996 Pfam Pumilio-family RNA binding repeat 729 762 IPR001313 GO:0003723
Tsu02g02123 996 Pfam Pumilio-family RNA binding repeat 808 831 IPR001313 GO:0003723
Tsu02g02123 996 Pfam Pumilio-family RNA binding repeat 693 727 IPR001313 GO:0003723
Tsu02g02123 996 ProSiteProfiles Pumilio RNA-binding repeat profile. 761 796 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02123 Tsu-Chr2 20886118 20924624 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02123 K17943 - gmx:100787039 1564.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02123 02 20886118 20924624 Tsu02g02123 02 20886118 20924624 ECH
Tsu02g05217 02 61108842 61114293 Tsu02g02123 02 20886118 20924624 ECH