Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05185 ATGGGTCAAAACCTTAGTTGCAGAGGTAACAATGATCATGGTCTTTTCATTGCTGTACAACAAGGTAATCTTCAAATTGTGACAACTCTGTTACAACAAGACCCTTTACTTTTTCATCAAACAACTCTCTATGATCGTTATTCACCTCTTCATATTGCTGCTGCTAATGGCCAGATCGAGattctttcaaGGCTTTTACATGGATCTGTTAATCCAGATATTTTAAATCGACAAAAACAGACTCCTCTTATGTTAGCTGCAATGCATGGAAGAATTGCTTGTGTGGAGAAGCTCCTTGAAGCTGGTGCTAATGTTTTGATGTTTGATACAGTTAATGGAAGAACTTGTTTACACTATGCTGCATATTATGGCCATTTTTCTTGCCTTAAAGCTATTCTTTCTTCTGCTCAATCTAGTCATGTGGCTGCTTCTTGGGGATTTGTTCGGTTTGTGAATATTAGAGACGGAAAGGGTGCGACACCTTTGCATTTAGCAGCTCGTCAAAGACGGGCGGAATGTGTGCATGTTTTATTAGACAGTGGAGCTCTTGTTTGTGCTTCAACTGGTAGATATGGCTATCCTGGTAGCACTCCCCTTCATCTAGCTGCAAGAGGGGGATCTCTTGATTGCATCCGTGAATTATTGGCATGGGGTGCGGATCGTCTTCAGCGTGATTCTTCTGGGCGGATACCATATACGGTTGCTATGAAACACAGACACAGACCATGTGCGTCATTGCTAAATCCTACATCTGCTGAGCCTCTTGTTTGGCCATCTCCACTGAAGTTCATCAGCGAACTTAATCCGGAAGCCAAAGCCTTGTTAGAACAAGCTTTGATGGACGCAAACAAAGAAAGGGAGCAAAATATATTGAAGGGGAAAGTTTACTCTCTTCCATCTCCATCACAGTCTGATTGTGTTGATGACAACATCTCCGAGATTAGTGAGTCAGAATTATGTTGCATCTGCTTTGAGCAAGTATGCACAATTGAAGTTCAGAATTGTGGTCACCAAATGTGTGCACAATGCACATTAGCCCTTTGTTGCTACAACAAACCGAACCCGACAACTGCTTCTATTACCCCACCAGTTTGTCCATTTTGTCGAAGCAATATATCTAGACTTATGGTTGTcatgaaaatagaaaatcaagACGAAACCGATCAAGACAATGTTGATATCAATTGTTCAAAGATAAACAAGTCGAGGAAACTCCGAAACTTAAACGAAAGTGGTAGTAGCAGCTTCAAAGGATTATCTAGTGTTTCGTTTGGAAAGTTAGGTGGCCGAAGCTCCGGAAGAGTTGCTGATGAGTGGATTGATAAACAGTAA 1332 0.4077 MGQNLSCRGNNDHGLFIAVQQGNLQIVTTLLQQDPLLFHQTTLYDRYSPLHIAAANGQIEILSRLLHGSVNPDILNRQKQTPLMLAAMHGRIACVEKLLEAGANVLMFDTVNGRTCLHYAAYYGHFSCLKAILSSAQSSHVAASWGFVRFVNIRDGKGATPLHLAARQRRAECVHVLLDSGALVCASTGRYGYPGSTPLHLAARGGSLDCIRELLAWGADRLQRDSSGRIPYTVAMKHRHRPCASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANKEREQNILKGKVYSLPSPSQSDCVDDNISEISESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCYNKPNPTTASITPPVCPFCRSNISRLMVVMKIENQDETDQDNVDINCSKINKSRKLRNLNESGSSSFKGLSSVSFGKLGGRSSGRVADEWIDKQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05185 443 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Tsu02g05185 443 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
Tsu02g05185 443 MobiDBLite consensus disorder prediction 410 443 - -
Tsu02g05185 443 Pfam Ankyrin repeats (many copies) 195 235 IPR002110 GO:0005515
Tsu02g05185 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 388 IPR013083 -
Tsu02g05185 443 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Tsu02g05185 443 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Tsu02g05185 443 ProSiteProfiles Ankyrin repeat profile. 112 144 IPR002110 GO:0005515
Tsu02g05185 443 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Tsu02g05185 443 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
Tsu02g05185 443 Gene3D - 10 143 IPR036770 -
Tsu02g05185 443 Gene3D - 144 297 IPR036770 -
Tsu02g05185 443 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Tsu02g05185 443 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Tsu02g05185 443 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Tsu02g05185 443 SUPERFAMILY RING/U-box 315 375 - -
Tsu02g05185 443 MobiDBLite consensus disorder prediction 410 427 - -
Tsu02g05185 443 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Tsu02g05185 443 SUPERFAMILY Ankyrin repeat 11 250 IPR036770 -
Tsu02g05185 443 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Tsu02g05185 443 SMART ANK_2a 194 223 IPR002110 GO:0005515
Tsu02g05185 443 SMART ANK_2a 227 256 IPR002110 GO:0005515
Tsu02g05185 443 SMART ANK_2a 45 74 IPR002110 GO:0005515
Tsu02g05185 443 SMART ANK_2a 10 39 IPR002110 GO:0005515
Tsu02g05185 443 SMART ANK_2a 112 141 IPR002110 GO:0005515
Tsu02g05185 443 SMART ANK_2a 78 107 IPR002110 GO:0005515
Tsu02g05185 443 SMART ANK_2a 157 186 IPR002110 GO:0005515
Tsu02g05185 443 Pfam Ankyrin repeat 158 185 IPR002110 GO:0005515
Tsu02g05185 443 Pfam Ankyrin repeat 112 136 IPR002110 GO:0005515
Tsu02g05185 443 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05185 Tsu-Chr2 60851045 60854439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05185 48 247 Miscellaneous Gene Families AT5G02620 28.846 2.10e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05185 - - gmx:100786708 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05185 02 60851045 60854439 Tsu02g05185 02 60851045 60854439 ECH
Tsu02g05185 02 60851045 60854439 Tsu02g02093 02 20416131 20420041 PCT