Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02093 ATGGGTCAAGGTCTTAGTTGCAGAGGTAGTCATGAACATGGTCTCTTTCGTGCTGTCCAACATGGTGACCTTCAAACTGTTTCTATTTTGTTAAAGACGCATCCTTCTCTTATTCATCGTACTACTGTTTATGACCACCATTCTCCTCTTCATATTGCTGCTGCTAATGGTCAGATCCAGGTTTTATCTAGACTTTTAGATGGATCTGCAAATCCAGATGTGTTGAATCGCCAAAAGCAGACTCCACTTATGTTGGCAGCAATGCATGGAAAAATTGATTGTGTGGAAAAGCTACTTGAAGCTGGTGCTAATGTATTGATGTTTGATGTGTGTCATGGAAGAACCTGTTTGCACTATGCTGCTTATTATGGTCATTCTTCTTGTCTTAAAGCAATACTTTCTGCTGCTCAATCTAGTCCTGTGGCTGCTTCTTGGGGTTTTTCACGGTTTGTGAATATTAGAGATGGTAGGGGCGCTACACCGTTGCATTTGGCAGCTCGTCAAAGACGATCTGAATGTGTGCATACTTTGTTGTGTAGTGGAGCTCTTGTTTGTGCTTCAACAAGCAGATATGGTTGTCCCGGGAGCACGCCTCTCCATCTAGCGGCTAAAGGCGGTTCTCTAGATTGTATCCGTGAACTATTGGCATGGGGTGCAGATCGTCTTCAACGTGATGCATCTGGGCGGATAGCGTATGTGGTTGCTCTGAAGCACAAACACGGAGCATGTGCTGCACTGTTAAATATTGCATCTGCACAGCCTCTTGTGTGGCCATCATCTTTGAAGATAATCAGTGAGCTTAATCCGGAGGCCAAATTATTATTAGAGCAGGCCTTGATGGACGCGAATAAAGAAAgggagaaaaatatattgaaaggAAGTCCTTACTCTCTTCCATCTCCAGCACACTCTGATCAGATGGATGACAATATCTCTGAGGTTAGTGAGACGGAATTATGCTGCATCTGCTTCGAGCAAGTGTGTACAATTGAAGTCCAGGACTGTGGCCACCAAATGTGTGCACAATGCACACTAACACTCTGTTGTCACAACAAGGCAAACACATCAACTTCTAATCCAACCCCACCCGTTTGTCCATTCTGTCGAAGCGCCATATCTAAACTAATGGTTATCAAGATAGAAACACACGACGACATTGATCAAGATGGCACCACCGATACCACTTGTTTCAAGCCAAGCAAGTCAAGGAAATTCCGTAACATGAACGAGGGTAGCAGCAGCAGTTTCAAGGGATTATCTTCATTCGGAAAAATGAGCGGCCGTAGTTCCGGTATGATTGCTTCCGAAAATGAGTGTATTGATGATAAGCCACAATGA 1338 0.4342 MGQGLSCRGSHEHGLFRAVQHGDLQTVSILLKTHPSLIHRTTVYDHHSPLHIAAANGQIQVLSRLLDGSANPDVLNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDVCHGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFSRFVNIRDGRGATPLHLAARQRRSECVHTLLCSGALVCASTSRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIAYVVALKHKHGACAALLNIASAQPLVWPSSLKIISELNPEAKLLLEQALMDANKEREKNILKGSPYSLPSPAHSDQMDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLTLCCHNKANTSTSNPTPPVCPFCRSAISKLMVIKIETHDDIDQDGTTDTTCFKPSKSRKFRNMNEGSSSSFKGLSSFGKMSGRSSGMIASENECIDDKPQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02093 445 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Tsu02g02093 445 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Tsu02g02093 445 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Tsu02g02093 445 MobiDBLite consensus disorder prediction 406 445 - -
Tsu02g02093 445 Pfam Ankyrin repeats (3 copies) 112 182 IPR002110 GO:0005515
Tsu02g02093 445 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Tsu02g02093 445 Gene3D - 9 147 IPR036770 -
Tsu02g02093 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 388 IPR013083 -
Tsu02g02093 445 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Tsu02g02093 445 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Tsu02g02093 445 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 436 - -
Tsu02g02093 445 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Tsu02g02093 445 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Tsu02g02093 445 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Tsu02g02093 445 MobiDBLite consensus disorder prediction 406 433 - -
Tsu02g02093 445 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Tsu02g02093 445 Pfam Ankyrin repeats (many copies) 195 232 IPR002110 GO:0005515
Tsu02g02093 445 PANTHER HOMEOBOX PROTEIN WARIAI 1 436 - -
Tsu02g02093 445 SUPERFAMILY RING/U-box 319 375 - -
Tsu02g02093 445 SMART ANK_2a 112 142 IPR002110 GO:0005515
Tsu02g02093 445 SMART ANK_2a 194 223 IPR002110 GO:0005515
Tsu02g02093 445 SMART ANK_2a 45 74 IPR002110 GO:0005515
Tsu02g02093 445 SMART ANK_2a 10 40 IPR002110 GO:0005515
Tsu02g02093 445 SMART ANK_2a 78 107 IPR002110 GO:0005515
Tsu02g02093 445 SMART ANK_2a 157 186 IPR002110 GO:0005515
Tsu02g02093 445 Gene3D - 148 197 IPR036770 -
Tsu02g02093 445 Gene3D - 198 252 IPR036770 -
Tsu02g02093 445 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02093 Tsu-Chr2 20416131 20420041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02093 36 247 Miscellaneous Gene Families AT5G02620 28.182 3.08e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02093 - - gmx:100800611 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02093 02 20416131 20420041 Tsu02g02093 02 20416131 20420041 ECH
Tsu02g05185 02 60851045 60854439 Tsu02g02093 02 20416131 20420041 PCT