Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05180 ATGGCAGCCTCTCAAGCAAGCCTTCTCCTTCAAAAACAGCTCAAAgATCTTTGTAAACACCCTGTTGATGGCTTTTCCGCTGGTTTGGTTGATGAAACCAATATTTTTGAATGGAGTGTAACCATAATTGGGCCACCAGATACTCTTTAtgagggAGGATTTTTCAATGCCATTATGAGCTTTCCGCATAACTACCCAAACAGTCCACCATCAGTGAAATTCACCTCAGATATATGGCATCCCAATGTATATCCTGATGGGCGAGTTTGCATATCTATTCTTCATCCTCCTGGGGATGACCCAAATGGTTACGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTGTTGAGTATCATTTCGATGCTTTCTGGGCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCGAAGGAGTGGAGGGACAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGTTGTGTGCGGAAGTCACAGGAAATGTTGTGA 504 0.4286 MAASQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPHNYPNSPPSVKFTSDIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05180 167 CDD UBCc 18 160 IPR000608 -
Tsu02g05180 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 167 - -
Tsu02g05180 167 Gene3D Ubiquitin Conjugating Enzyme 2 167 IPR016135 -
Tsu02g05180 167 SMART ubc_7 8 165 - -
Tsu02g05180 167 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 79 94 IPR023313 -
Tsu02g05180 167 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 165 IPR000608 -
Tsu02g05180 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 3 167 - -
Tsu02g05180 167 SUPERFAMILY UBC-like 4 163 IPR016135 -
Tsu02g05180 167 Pfam Ubiquitin-conjugating enzyme 10 159 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05180 Tsu-Chr2 60779707 60784297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05180 12 132 Miscellaneous Gene Families AT3G17000 30.769 4.24e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05180 K10575 - gmx:100499900 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05180 02 60779707 60784297 Tsu02g05180 02 60779707 60784297 ECH
Tsu02g05180 02 60779707 60784297 Tsu02g02071 02 20168030 20171563 ECH
Tsu02g05180 02 60779707 60784297 Tsu02g02071 02 20168030 20171563 PCT