Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02071 ATGGCGTCCCAAGCTAGCCTTCTCCTTCAAAAACAACTCAAAGATCTTTGCAAAAACCCTGTCGATGGCTTTTCTGCTGGTTTGGTTGATGAAACCAATATTTTTGAATGGAGTGTCACCATAATTGGACCTCCTGATACTCTTTATGAGGGAGGGTTTTTCAATGCCATCATGAGTTTTCCTTCCAATTACCCTAATAGTCCGCCATCAGTGAAATTTACCTCAGAGATATGGCACCCTAATGTATACCCTGATGGCCGGGTTTGCATATCAATTCTCCATCCTCCTGGTGATGATCCTAATGGTTACGAGCTTGCAAGTGAGCGTTGGACACCTGTTCATACAGTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCGGTCCAAATGATGAATCTCCTGCAAATGTTGAAGCTGCAAAAATGTGGAGAGAAAATAGAGAGGAATTCAGGAAGAAGGTCGGTCGATGTGTAAGAAAATCACAAGAGATGTTGTGA 501 0.4192 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKMWRENREEFRKKVGRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02071 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Tsu02g02071 166 SMART ubc_7 7 164 - -
Tsu02g02071 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Tsu02g02071 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Tsu02g02071 166 CDD UBCc 17 159 IPR000608 -
Tsu02g02071 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Tsu02g02071 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Tsu02g02071 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Tsu02g02071 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02071 Tsu-Chr2 20168030 20171563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02071 11 131 Miscellaneous Gene Families AT3G17000 31.538 3.88e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02071 K10575 - qsu:112026130 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02071 02 20168030 20171563 Tsu02g02071 02 20168030 20171563 ECH
Tsu02g05180 02 60779707 60784297 Tsu02g02071 02 20168030 20171563 ECH
Tsu02g05180 02 60779707 60784297 Tsu02g02071 02 20168030 20171563 PCT