Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05148 ATGGTGCCGCAACAATCTATGAATGTGAGCACCCCAAGAAAAAAGATGACAAAACAAATGACAGGAAAAAGGGATGATACACATTTGCATTCTGCAGCAAGAGCAGGGAATTTAGATGTTGTGAGGGATACCCTTAATTTTACTGAGGAGGATGGATTGATTGAATTATTGGCTAGACAGAATCAAGATGGAGAAACAGCTCTTTATGTTGCTGCTGAGTATGGTTATATTGATGTTGTTAGAGAAATGATTCAATATTATGATCTTGCTGATGCTGGAATTAAAGCAAGAAATGGTTTTGATGCATTTCACATTGCTGCCAAACAAGGGGATATAGATATATTGAAGATCCTTATGGAGGTTCATCCTGATTTGTCAATGACAGTGGATCCATCAAACACAACAGCATTACACACAGCTGCAACCCAAGGACATATTGAAATAGTAAAATTTCTATTGGAAGCAGGAAGTAGTTTAGCaaccattgctaaaagtaatgGAAAAACAGCACTTCATTCTGCTGCAAGAAATGGACATTTAGAAGTTGTAAAAGCACTTGTTGAGAAAGAGCCTGGAGTTGCAATAAGGACTGATAAGAAGGGCCAAACAGCACTTCACATGGCAGTGAAGGGACAAAATCTTGAGGTCGTGGAGGCATTGATAGAAGCAGATCCTTCAACAATAAACATGGTTGATAATAAGGGAAACACTCCATTGCATATAGCAACCAGAAAAGCCAGGTCACAGATTGTAAAAATGCTTCTTGGACAGcaagaaacaaataaaagtgCTGTTAACAGATCAGGTGAAACAGCAGTAGACACTGCTGAGAAAACAGCGAACCAAGATATTAAAGCCATTCTATTAGACCATGGTGTTCCAAGTGCCAAATCCATAAAACCACAAGGAACAACAACAGCTCGCGAGTTAAAACAAACCGTAAGCGACATAAAACACGAGGTACATTACCAATTAGAACACACGCGCCAAACGCGGAAACGTGTGCAAGGAATTGCGAAACGTATCAACAAGATGAATACAGAAGGACTAAACAATGCAATAAACTCAACAACCGTTGTAGCAGTACTAATAGCAACAGTTGCATTTGCCGCGATTTTCACTGTCCCTGGTCAATTTGTTGATGATCCAAACAATATTCCAGAAGGAATGACACTTGGTGAAGCAAATATATCTCCACAATTAccatttataattttctttgtgGTTGATTCTATTGCACTCTTCATTTCTCTGGCTGTTGTGGTTGTTCAAACTTCAGTTGTTGTTATAGAAAGCAAAGCAAAGAAACAAATGGCAGCTATTATTAATAAGCTAATGTGGGTGGCTTGTGTACTTGTTTCTGTGGCATTTTTGGCATTGTCTTTTGTTGTGGTTGGAAAGGAACAAAAGTGGTTGGCAATTGGTGTTACCATTATAGGGACAACTATAATGGCTACAACATTGGGAACTATGTGTTATTGGGTTATTAGGCATCGAATTGAGGCAAAAAATTTGAGGAATATAAGGAAATCTTCAATGGAAAGCAAGTCAAAATCTTTTTCAGTGACTGCTTATTCAGATTCTGAGCTGATGAACAATGATTTTAAGAAAATGTATGCTATTTAG 1626 0.3702 MVPQQSMNVSTPRKKMTKQMTGKRDDTHLHSAARAGNLDVVRDTLNFTEEDGLIELLARQNQDGETALYVAAEYGYIDVVREMIQYYDLADAGIKARNGFDAFHIAAKQGDIDILKILMEVHPDLSMTVDPSNTTALHTAATQGHIEIVKFLLEAGSSLATIAKSNGKTALHSAARNGHLEVVKALVEKEPGVAIRTDKKGQTALHMAVKGQNLEVVEALIEADPSTINMVDNKGNTPLHIATRKARSQIVKMLLGQQETNKSAVNRSGETAVDTAEKTANQDIKAILLDHGVPSAKSIKPQGTTTARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMNTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPNNIPEGMTLGEANISPQLPFIIFFVVDSIALFISLAVVVVQTSVVVIESKAKKQMAAIINKLMWVACVLVSVAFLALSFVVVGKEQKWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEAKNLRNIRKSSMESKSKSFSVTAYSDSELMNNDFKKMYAI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05148 541 SMART ANK_2a 234 264 IPR002110 GO:0005515
Tsu02g05148 541 SMART ANK_2a 24 56 IPR002110 GO:0005515
Tsu02g05148 541 SMART ANK_2a 200 230 IPR002110 GO:0005515
Tsu02g05148 541 SMART ANK_2a 63 92 IPR002110 GO:0005515
Tsu02g05148 541 SMART ANK_2a 132 161 IPR002110 GO:0005515
Tsu02g05148 541 SMART ANK_2a 166 195 IPR002110 GO:0005515
Tsu02g05148 541 SMART ANK_2a 98 127 IPR002110 GO:0005515
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
Tsu02g05148 541 MobiDBLite consensus disorder prediction 1 25 - -
Tsu02g05148 541 Pfam Ankyrin repeat 235 256 IPR002110 GO:0005515
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat region circular profile. 200 222 - -
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat region circular profile. 166 189 - -
Tsu02g05148 541 PANTHER ANKYRIN REPEAT PLANT PROTEIN 7 541 - -
Tsu02g05148 541 MobiDBLite consensus disorder prediction 1 16 - -
Tsu02g05148 541 Gene3D - 3 163 IPR036770 -
Tsu02g05148 541 Pfam Domain of unknown function 348 464 IPR026961 -
Tsu02g05148 541 Gene3D - 164 339 IPR036770 -
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat region circular profile. 234 255 - -
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat region circular profile. 98 126 - -
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat region circular profile. 132 159 - -
Tsu02g05148 541 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 7 541 - -
Tsu02g05148 541 SUPERFAMILY Ankyrin repeat 29 293 IPR036770 -
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat region circular profile. 63 85 - -
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat profile. 98 130 IPR002110 GO:0005515
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat profile. 200 222 IPR002110 GO:0005515
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat profile. 63 85 IPR002110 GO:0005515
Tsu02g05148 541 Pfam Ankyrin repeats (3 copies) 25 86 IPR002110 GO:0005515
Tsu02g05148 541 Pfam Ankyrin repeats (3 copies) 93 159 IPR002110 GO:0005515
Tsu02g05148 541 Pfam Ankyrin repeats (3 copies) 166 225 IPR002110 GO:0005515
Tsu02g05148 541 ProSiteProfiles Ankyrin repeat profile. 234 255 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05148 Tsu-Chr2 60534883 60537721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05148 10 541 Miscellaneous Gene Families AT1G07710 73.308 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05148 - - gmx:100779230 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05148 02 60534883 60537721 Tsu02g05148 02 60534883 60537721 ECH
Tsu02g05148 02 60534883 60537721 Tsu02g03494 02 39166827 39170561 ECH
Tsu07g03829 07 44498991 44502315 Tsu02g05148 02 60534883 60537721 ECH