Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03494 ATGAATCCAATGGACACAGAAGGAGAAACTGTGCAGCCTCAGGCTGCAGCTGCACCACCAGTAAGGGCTCAAAGGAAGAAAATGACGAAACAATTGACGGGGAAGCGCGATGATACGCCTTTACATTCTGCGGCAAGAGCAGGAAATATGGCTTCTTTGAAGGATACAGTTGATGGTGCTGAAGAAGGTAAACTGCGCGAAATATTTAATAAGCAGAATCAAGGTGGAGAAACAGCACTTTATGTTGCTGCTGAGTATGGTTATGTTGATATGGTTAGGGAGATGATTCGGTATTATGATCTTGTTGATGCTGGAATTAAAGCTAGAAATGGTTTTGATGCACTTCATATTGCTGCTAAACAAGGAGATTTAGATATAGTAAAGATCCTAATGGAGGCACATCCTGAATTGTCAATGACTGTGGATCCATCCAACACCACAGCTTTACATACAGCGGCAACACAAGGCCACACTGAGATAGTGAAATTTCTATTAGAAGCAGGTAGTAGCTTAGCAACCATTGCTAGAAGTAATGGTAAAACAGCTTTGCATTCTGCTGCAAGAAATGGACATTTGGAGGTTTTGAAAGCGATTCTAGAGAAGGAACCTGGTGTTGTAACAAGGACTGATAAAAAGGGACAGACGGCGCTTCACATGGCAGTGAAGGGACAGAGTCTTGTGGTGGTAGAGGAGTTGATAAAAGCAGATCCATCAACAATAAACTTGGTTGATAATAAGGGTAATACAGCATTGCATATAGCAACCAGAAAGGGAAGAACTCAGTTCATCAAGTTGATACTTGGACGGAGTGAAACAAATGGCATGGCGGTAAACAAAAGTGGCGAAACAGCATTAGACACAGCCGAAAAAACAGGAAATTCTGAAGTAAAAGACATTCTAACAGAACATGGTATTCAAAGTGGCAAATCCATAAAATCTCAACCAAAAACAGCTGCAACCAGagaattaaaacaaacagtCAGCGACATAAAGCATGAAGTCCATCACCAACTAGAACACACACGCCAAACGCGAAAAAGTGTTCAAGGAATCGCAAAACGTCTCAACAAAATGCACACAGAAGGACTCAACAATGCAATAAACTCAACAACCGTCGTCGCAGTCCTCATCGCAACAGTCGCATTCGCAGCTATCTTCACTGTCCCAGGCCAATTCGTGGACgatccaaaaaaaattcctaaaggAAAATCCCTCGGCGAAGCAAACATAGCTCCGAATCCCGCGTTtataatcttcttcatcttcgACTCATTCGCACTTTTCATCTCCCTAGCGGTCGTGGTGGTTCAAACTTCAATAGTTGTTATAGAAAGCAAAGCAAAGAAGCAAATGATGGCTATAATTAACAAACTAATGTGGTTAGCTTGTGTGCTTATTTCTGTTTCATTTTTGGCGTTGTCTTTCGTCGTTGTTGGGAAAGATCAAAGGTGGCTTGCAATTGGAGTAACTGCAATTGGAACCACTATAATGGCTACTACATTAGGTACTATGTGTTATTGGGTTATTCAGCATCGAATTGAATCTTCGAGTATAAGGAGATCTTCAATGGGTAGTAGATCAAGGTCTTTTTCAGTTTCAGTTGTTATGTCAGATTCTGAGATATTAAACAATGAGCGTACTAAAATGTATGCTATTTAG 1659 0.399 MNPMDTEGETVQPQAAAAPPVRAQRKKMTKQLTGKRDDTPLHSAARAGNMASLKDTVDGAEEGKLREIFNKQNQGGETALYVAAEYGYVDMVREMIRYYDLVDAGIKARNGFDALHIAAKQGDLDIVKILMEAHPELSMTVDPSNTTALHTAATQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVLKAILEKEPGVVTRTDKKGQTALHMAVKGQSLVVVEELIKADPSTINLVDNKGNTALHIATRKGRTQFIKLILGRSETNGMAVNKSGETALDTAEKTGNSEVKDILTEHGIQSGKSIKSQPKTAATRELKQTVSDIKHEVHHQLEHTRQTRKSVQGIAKRLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPKKIPKGKSLGEANIAPNPAFIIFFIFDSFALFISLAVVVVQTSIVVIESKAKKQMMAIINKLMWLACVLISVSFLALSFVVVGKDQRWLAIGVTAIGTTIMATTLGTMCYWVIQHRIESSSIRRSSMGSRSRSFSVSVVMSDSEILNNERTKMYAI 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03494 552 Pfam Ankyrin repeats (3 copies) 28 98 IPR002110 GO:0005515
Tsu02g03494 552 Pfam Ankyrin repeats (3 copies) 105 171 IPR002110 GO:0005515
Tsu02g03494 552 Pfam Ankyrin repeats (3 copies) 178 237 IPR002110 GO:0005515
Tsu02g03494 552 ProSiteProfiles Ankyrin repeat region circular profile. 178 201 - -
Tsu02g03494 552 Pfam Domain of unknown function 361 477 IPR026961 -
Tsu02g03494 552 Pfam Ankyrin repeat 247 270 IPR002110 GO:0005515
Tsu02g03494 552 Gene3D - 12 173 IPR036770 -
Tsu02g03494 552 ProSiteProfiles Ankyrin repeat region circular profile. 144 171 - -
Tsu02g03494 552 ProSiteProfiles Ankyrin repeat region circular profile. 246 267 - -
Tsu02g03494 552 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 17 552 - -
Tsu02g03494 552 Gene3D - 174 350 IPR036770 -
Tsu02g03494 552 SUPERFAMILY Ankyrin repeat 40 305 IPR036770 -
Tsu02g03494 552 ProSiteProfiles Ankyrin repeat profile. 178 210 IPR002110 GO:0005515
Tsu02g03494 552 PANTHER ANKYRIN REPEAT PLANT PROTEIN 17 552 - -
Tsu02g03494 552 ProSiteProfiles Ankyrin repeat profile. 246 267 IPR002110 GO:0005515
Tsu02g03494 552 ProSiteProfiles Ankyrin repeat profile. 144 176 IPR002110 GO:0005515
Tsu02g03494 552 SMART ANK_2a 246 279 IPR002110 GO:0005515
Tsu02g03494 552 SMART ANK_2a 178 208 IPR002110 GO:0005515
Tsu02g03494 552 SMART ANK_2a 212 242 IPR002110 GO:0005515
Tsu02g03494 552 SMART ANK_2a 144 173 IPR002110 GO:0005515
Tsu02g03494 552 SMART ANK_2a 75 104 IPR002110 GO:0005515
Tsu02g03494 552 SMART ANK_2a 280 313 IPR002110 GO:0005515
Tsu02g03494 552 SMART ANK_2a 36 67 IPR002110 GO:0005515
Tsu02g03494 552 SMART ANK_2a 110 139 IPR002110 GO:0005515
Tsu02g03494 552 MobiDBLite consensus disorder prediction 1 53 - -
Tsu02g03494 552 ProSiteProfiles Ankyrin repeat region circular profile. 110 132 - -
Tsu02g03494 552 ProSiteProfiles Ankyrin repeat profile. 110 142 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03494 Tsu-Chr2 39166827 39170561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03494 4 552 Miscellaneous Gene Families AT1G07710 70.705 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03494 - - gmx:100809687 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03494 02 39166827 39170561 Tsu02g03494 02 39166827 39170561 ECH
Tsu02g05148 02 60534883 60537721 Tsu02g03494 02 39166827 39170561 ECH
Tsu07g03829 07 44498991 44502315 Tsu02g03494 02 39166827 39170561 ECH