Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05131 ATGCATTCATCCTTAAGGTTCCTTAAAATGTGTCTATcttttttaatgttgttgttcttcttccTCATCATGATCATTTCACCTTCATTATCATCTCCAAATTGTTCCAAAAACAATGATACTCTCCTTTCTTCAAAATTACAAGCAGAAAATCTCATAAGAGAACTTAATCTTTTTCCAAAACATTCCATAAACATACCAAAGAATCTTCCTCATTTTGTTCGGGGAAACATTGTTGAGAAGAAGTTGAGTTTCCCTGGTTTTGTTGACTCTGGTCCTTCTGTTGAAGAACTTGGTCATCATGCAGGGTATTATAGTCTTCCTCATTCCAAAGCTGCAAGGatgttctattttttctttgaatctCGAAACAGTAAGGATGATCCTGTTGTCATATGGCTAACTGGAGGTCCGGGATGCGGCAGTGAACTTGCTTTGTTTTGTGAAAATGGTCCTTTTCAATTCTCAAAGGACAATTCCTCCCTTGTTTGGAATCAATATGGATGGGACACGgcatcaaatattatatttgttgaccAACCCATAGGATCAGGTTTCAGCTATACCACTGAGGATAGTGACATTCGACACGATGAAAATGGTGTTAGCAATGATTTGTATGACTTCTTGCAGGCATTCTTCAAGGAGCATCCTCAGTTTACTAAGAATGACTTTTATATAACTGGAGAATCATATGCTGGACATTACATTCCAGCATTTGCATCCAGAGTTCATCAAGGAAATAAGGCAAAAGAAGGAATTCATATAAATCTTAAGGGATTTGCTATTGGGAATGGATTAACCAATCCAGAAATTCAATACAAGGCATATACAGATTTTGCATTAGACAATGGACTAATTAATAAGGAAGAACATGACAATATCAACAAGTTGTTCCCACAATGTCAAAAGGGCATAGAAGATTGTGgCGCTAAAGGTGGAGATGCATGCATGTCTTCAATAGTTAATTGCTCTAAAATATCCGATCGGATTATGGCCATAGCCGGCGACATTAATCCCTATGACATCAGAAAGAAATGTGAGGGAGGTCTCCCTCTCTGTTATGACTTCTCCAACATGGTCACATTCTTGAACATGAAGACCGTAAGAGAAGCTTTAGGTGTTGGGGACTTGGAATTCATTTCTTGCAGTGGCACAGTATACCATGCCTTGTTGGAGGATTGGATGAAAAATCTAGAAGTTGGTATTCCTGTTCTTCTTGAGGATGGAATCAAGTTGCTTGTGTATGCTGGAGAATATGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGTTGATGCCATGCAGTGGTCAGGTCAAAAAGAATTTAACTCATCTCCTACAAACCCTTATTTGGTTGATAGTGAGGAAGCAGGAACTCTAAAAAACTATGGTCCTCTGGCTTTTCTCAAGGTGAAAGAGGCTGGTCACATGGTTCCAATGGATCAACCAAAAGCAGCACTTCAGATGTTAAAAGATTGGATGCAAGGGAAACTATATAGTAAGGACAAGAGGATGACATGA 1527 0.3726 MHSSLRFLKMCLSFLMLLFFFLIMIISPSLSSPNCSKNNDTLLSSKLQAENLIRELNLFPKHSINIPKNLPHFVRGNIVEKKLSFPGFVDSGPSVEELGHHAGYYSLPHSKAARMFYFFFESRNSKDDPVVIWLTGGPGCGSELALFCENGPFQFSKDNSSLVWNQYGWDTASNIIFVDQPIGSGFSYTTEDSDIRHDENGVSNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPAFASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYKAYTDFALDNGLINKEEHDNINKLFPQCQKGIEDCGAKGGDACMSSIVNCSKISDRIMAIAGDINPYDIRKKCEGGLPLCYDFSNMVTFLNMKTVREALGVGDLEFISCSGTVYHALLEDWMKNLEVGIPVLLEDGIKLLVYAGEYDLICNWLGNSRWVDAMQWSGQKEFNSSPTNPYLVDSEEAGTLKNYGPLAFLKVKEAGHMVPMDQPKAALQMLKDWMQGKLYSKDKRMT 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05131 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 177 IPR001563 GO:0004185|GO:0006508
Tsu02g05131 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 213 238 IPR001563 GO:0004185|GO:0006508
Tsu02g05131 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 468 481 IPR001563 GO:0004185|GO:0006508
Tsu02g05131 508 PRINTS Carboxypeptidase C serine protease (S10) family signature 178 188 IPR001563 GO:0004185|GO:0006508
Tsu02g05131 508 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 500 IPR001563 GO:0004185|GO:0006508
Tsu02g05131 508 SUPERFAMILY alpha/beta-Hydrolases 99 499 IPR029058 -
Tsu02g05131 508 Pfam Serine carboxypeptidase 97 498 IPR001563 GO:0004185|GO:0006508
Tsu02g05131 508 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 48-RELATED 41 500 - -
Tsu02g05131 508 ProSitePatterns Serine carboxypeptidases, serine active site. 227 234 IPR018202 GO:0004185
Tsu02g05131 508 Gene3D alpha/beta hydrolase 81 507 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05131 Tsu-Chr2 60350182 60373171 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05131 K16298 - gmx:100785987 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05131 02 60350182 60373171 Tsu02g05131 02 60350182 60373171 ECH
Tsu02g03656 02 41122049 41125802 Tsu02g05131 02 60350182 60373171 PCT