Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05108 ATGGTAAATAGTACTCGTGCTAGTCAAAAGGCTAAGGATGAAGAAAACGGGAGGGTGACTCGAAGTAGTGAGAAAGCAAAAATTAATGGACATCCTAATGGATTGGATACAGACAGTATTAGAAAGTCTACTAGAGAAACACCGTTAAGGAAGACGAATGCCAGCACATCAAGTACTCAGAAGTCCGAGAAAGTAGAGAAGGGAACATTACCAGCTTCAGAAGCTAGAAGGAGGTCTGAAAGGGTTGAGAAAAAGAAGACGCCGAGTCCTTTGACAAGATCTGGAAAAACTAGgaatccttcttcttcttctagtCCTTCAGATTCTAAAAGTACAGGGTCATTGGGTTCAATTTCAAGGCAGAAGCTACAAAAACAGAAGAGTGTGAAGCAGTTGACATTTGAAGCTCCGGAAGTGACTGAAAATGAGGAACACAATGTGGGAACTTCCCAGGTGAGAATAAAGAGAATGGACGCCCGTATGTATCGGTCTCTCTTTAAAGATCGAAAGAAAGATTGCCTTAGGAAATCAGATACGATTAAGTCAAATCAGGAAGGTGACAACAGTAGTGGAGCCAAGATTGATGAGTTATCTAAAGGAAATTGCTCAGATAATAAAGAAGTCTCAAAGAATGGAACATTGTCATCTGAAGATGCCAAATCAAAAGAGACCAGAGTTGACTTGAGTATTGACGAGCAAAAGTGCCAAAGCAAAGGTGACAACAGTAGCGGAGCCAAGATTGATGAGTTATCTAAAGGAAGTTGCTCAGATATTAACGAAGTCTTAAAGAATGGTACACTGCCATCTGAAGATGACAAAGCAAACGAAACAAGAGTTGACTCTAGGTTGAGTGGGCCTATGACAAATTTAGCAGAAAATAATGTGACTCCTGGTTCATTCATACCGTCTAACACCCCAACTGATGAGACTAGTGTCGTACCCACAAGGGTACAGTCTGATTGCTGCAGAGAGGAGACATTACCAACATTAGCGTCAGGAAATTCTATGTTAGACGATGATGACATGATCAGTAACAATGCTGAGCTTTGTGGGGGTGAAAACTTGACACCTTCTAAGAGAAAAGTAATCACAGTGGACACGGAATTAAATGTTTCTTCCACATTATCTAAAGGAGACAACTGGAACTTGATCCCTGATGCTCTCCCTTCCAAGTTAGGTGGAATTGGAAATGAGTCATGTTCCAAACGAACAAGGTTGGATTATAATCATACAGTCAAGGAGTCATGTGATCCATGTGCAGCTGAGCATCAGGACGAAGATGACATTGAGCCAACCATGGTGCAGAAGGATAAGAGTGACCACACAAGTGGAATTGGACTCCTGAAGGATAGCGTTGCGGAAGACAATAATATTCTGGTTCTTGATGGTCAAAATGATAATGAAAAAGatagtttaatatataattcCAATAAAAGTGTTGTTCAGCCGAAGGAGAAATTGTCAAGTCATATTGCAAACAGATGCAAGTCTGACTCCTATAGGTTTGTTGAGTATTGGGTTCCTGCACAGATATCTCATGTGCAGCTTGAGCAGTATTGTGCTACTTTACTTTCAAATGCTTCAATTCTTTGCTCGTCACCCAAGATTGATTGTGTTGGGGCCATTCGTGATGTCCTTATTTCAATCCGGAAGTGTTGTAATCATCCCTATGTTATTGAGCCATCCGTGCAAACTTTACTATTCAAGGACCTTGAAGAAGTTAATTATCcgagtgaaaaagaaaaagtagctGAGTATCTAAATGTTGGAATAAAAGCAAGTGGCAAGCTGCAACTACTTGATTCAATGCTCACAGAGTTGAGAAAAAATAACTTAAGGGCACTCGTGCTTTTTCAGTCTATTGGAAAGGATTCAATTGGAGATATTTTAGATGACTTCCTGCGACAAAGATATGATGTAGATTCATTTGAACGAATTGATAAAAGTCTCGCGCCTTCCAAGAAGCAAGCTGCCATGAAGAAATTTAATGACAAGAATAATAAGCGATTTGTCTTTCTGATGGAAACTAGTGCCTGCCTTCCTAGCATAAAATTGTCATCAATTGACACTGTTATTATATTTGATAGTGATTGGAACCCAATGAATGATATAAGATCCCTTCAGAAAATAACACTTGATTCACAGTTTCCATCAATCAAAATGTTCCGTTTATATACAGCTTTCACTGCTGAAGAGAAAGCCTTAATTCTTGCTACACAAGATAAGACCCTGGACATAAACTGTCTATATTCAAGCCGGGGTCTCAATCATACTCTATTGATGTGGGGTGCTTCTCGTCTTTTTGACGAGTTGGGGGTTTCCCTTGACGGTTCAACTTCTACGTCAAGTCCTAAACCACTGCTAGAAGAAACTGTTTCAGAGTTCACATCCTGTCTATCTGATGCTGCTGAAGATTCGGACATGAGCAACCGCTCAACTTTATTGAAAGTCCAGCAAAATGGAGGAGCCTACCGTTCCAACTTTCCTTTGCTTGGTGAACTGAAACTTGGGTCGCCGGATGAAGAGTCACCGCAAACTTTTTGGACTAAACTATTGGAGGGAAAACATTTTCAATGGAAGTACTCATGTAGTCCATCTCAGCGGAGTCGGAAGAGAGTTCATTGTTTCAATAATTTGGCAGGTGGGACCAACCCTGTGAATGAAGGCATAACAAAGAAGCGCATGAAAGTGAGCAACAATACTGTTGATCAGCCTACGTCGAAATCTGAAGGTGAAAAGTTACCCACTGGAGTCAAGGCAGGAATCTTTGGAGATCTAGTGGATAAACCTCAGGATAATGATGTTGGATCCGAGAAAAACGGCAGAGTACATGATGAGCAGAGGAGCTTACATCTTTTGCTGAAGCCACAGATCACAAAGCTCTGTGAAGTTCTTCTTCTTCCAGATAATGTCAAGAATATGGTTGACAATTTTCTTGAGTATGTTATGAACAATCACCATGTCGATAGGGAACCCGTGTCAATATTACAGGCTTTTCAAATATCTCTGATTTGGACTGCCGCTTCTTTGCTAAATCACAAACTTGACCACAAGGCTTCTCTTATTCTTGCggaacaaaatttgaattttgactGTAAGAAAGGAGAGGTGGACCTCATTTATTCTATGCTGCGGTGtctaaagaaaatatttttacatcgtacagaaaattataataatacttCTCCAAAAGCTTCTAAATCACAGAGAGTTTCATGTACAGGAGTGGCACAAGAGGTTgaattgttcaaaaaagattTGTCCAAAAGcgttaaaaaaattcagaaaaagtgtgaaaaaacgCTGAATAAGATACGCCTTATGCACCAGGAAGAGAAACAAAGGTTGAGAGCGGTTAATGAGGTTCAAAAGGCTGAATTGGAGAGAAAATACACAATAGAGTTAGCATTCACTCGATCCTGCTCTCCTAATGAGGTGACGAGAATAGAAATgctcaaaattttgaatattgAACATAAAAAAAGGATCGAAGATCTGGAATATCAGTATGAAACAAGTCTCAAAGATCTCGAGGACAAACATTCAGCTCATATACTAAAGGTTCAAGACTGCGAGGCCACTTGGGTGGAAGATTTGAAATCTTGGGCAAAAAACGAATTGCGAAACATAGTTGCTTTAAAGGAACTTGGGACTGGGTTTGATTACCCACAGATGTGTGATAATATGGTTGAATCCATGAAAGAGACTGGGGCTGTGGTTCCTGAAACAAATTCCCCTTCAGTTGGTAAAACAGTTGAACAACAAAATTCTCTGGTCAAGCATGACAAGGCTATTGAAATGGACATTGTGGTTTCAAATGATCGAGCAGTCTCTGGAAATGAGGACCATAATACGACTGAAAATCAACATGTCAGACAGGAAAATATTCTCTCTAAACTTTCCCATTCCAGAGAGCAAAATTCTGATGGTGCTACAAGCATGACAGATGAAGCTCATAGGTGCGAAAAATTTGGCCATGAGTCTAGAGATGGTTGTGAGAAGCCTAGTTTAGATACCACGTGCTTGCCGGATTGTAGAGAACATAATTCTGATTGTGCTACAAGCATGACAGATGAAGATAATAGGTGTGCAAATTTTGGCCATGGGTTTCGAGATGGTTGTGAGATGCCTAGTTTAGGCACCGCATGCTTGCCAGACTGTGAGAATGCGACACATCCAGTGCACCAGTGTTCTGATGGAGGCTCATCAAGCGTACCTGAAGGGCAAATTCCAGGTGAAGTGCAAGAAACTACTAATGGAGGGGACTCTGTAAGTGTATCAGAAAGACAGGTACAAGTTGAAATGTCTGAGGCCGTCAATTTCACTGATTGTCTGCTGCAGAATGCAACTCATCTGAATCCCCCTTCATCTGTGGCTCAAATATCCGACAGAGGTTCAATAGATGTGCCAGTTTTAGATGGCGTTTCATCACCAAGGCCTTGTCAAGCTGCTTGTTCAACCAGTTGTCGAGATACAATTTCCCTTTCAAATCCACCTTTGGAGCAACAAATACCTGATGGACTCTTGAGTATTCCTGATGGAGATATTCCTGTCACAGTGCCAGAAAATAGCCATGCAGTGGCAGATTGTCATAAGGATATAGAGCCTTCAACAAATGCTGTGCTGGTGAATAATAGTACCACAAATGACCAGGAGGAAGGAGTACTTGGAACTGTGACCAGTGCTCCAGTATCTTCTAGACCAGTTGATGTCATGCAGCCTCTAGAACAAGGGCAACAATTGCCGTCTGTGGAGTCTGCTGCTGACAATGATTCAGCTGGGAAAATGCAAAATTCTTATGAGCAAGTTCAACTGGCATCTCGTTCAGCTGATGTTGTACCAGGCAATCAAATCACGGTGCCTCCAAAGCAGGTGCATCAATTAGCTGCTGCAGAGCTCTCTTCCAACTTGGGTATGTTGGGTTTGTCTAATTCTCATTTAGCAACTGAAGATGAACATCAGCCGAGCAATGTACGCAATATCCCCACTCATCATCCTGAGCCATCTTCTGTGGTTCCAAATAAAGATGTTGGGCAGCCACACTCAAATTCGGCACTTGTTTTACATTCAAATCAAGCTGCCGTGCACCCTGTCTCAAATTCAGATCTTGATTCACTTACAGCCAGTAGAGTTAGAGCACAGTCTCCCAACCCAAGAAATTTGTCAACTCCTTTGGAGATGAATAATCATCCTATCCAATCTGCAGCCCCTTCGTCTTCCAGAAGGCTTCCACATTTGTCCTATGATCCActgaaaattgaatttgaaaaaatacaaaaagcaATAGAACAAAATTCGAAAAGCCATGAAGATTCGAAATTGCGGTTGAAATCTGATTTTGAAAAGGAATTAGCGGAGCTTCGTAAAAAGTATGATGTTAAATTTCAAGAGATGGAAATTGAATTTCAGCGAACAAAGAAGACTCTGGATACAAATCTTAACACAGTTTGTGTGAATAAGTTATTGGCAGATGCTTTTAGGTCTAAATGCTTGGATCTTAAAGTACCTGGTGCTTCAGGAATGCAACATGATTCACTTCCGCAGCAATTGCATCAACTTTCAAGTCAACAAACTGCTACTCGGTCGTTAGTGGTTTCTGGTTCTTCTTCCGGTCAGCCTCCTGCGACAAGTCTGCTGAGTCCCTCCATTGCTCACAGTCAGCCTCCTGCGACCAGTCTGCTGAGTCCCTCCATTGCTCTTAACTCACAGCATATGTTACCACCTGGTTACAATAAGTCAGGAACTTCCTCCGGTGTCTCTGCAAGGCCACTTTTCATAAACACTACTAGGTCTTCAATCGCCCGAGATGTTCAAACTGGCGGCGAGATACGTGCCCCTGCACCACATCTCCAATCTTCTAGACCCCCAAATTCTGTTCCACCCTCCAATTTCCATCCTCTTCTACGCGGTCTAAGTCAGACAGCTCCTAGTAACCTTCGAGCAACTTCAACCTCACTCGCTCATGTCCCACCCTTGCAAAGACAAACAACCCATCAGTCTAGTCCACAAACGGGACACCGGCCTGACAGTGCAGGCAGATTAGCCACTCCTAACTTACCTTTCACGGGTTCACATGGGAATGTTAGCAATGCTATAACCTCCCCAAATGTTATTTCGCGTTTGCCAGAGGCTCCCGCTAACCTATCCAGATTTGGGCCCAATAGCAGTAGCATGGTGGCTAACTCATCACATCAAGCCGCATCTGCAGATTTAGTATGTTTATCAGATGATGACTGA 6237 0.408 MVNSTRASQKAKDEENGRVTRSSEKAKINGHPNGLDTDSIRKSTRETPLRKTNASTSSTQKSEKVEKGTLPASEARRRSERVEKKKTPSPLTRSGKTRNPSSSSSPSDSKSTGSLGSISRQKLQKQKSVKQLTFEAPEVTENEEHNVGTSQVRIKRMDARMYRSLFKDRKKDCLRKSDTIKSNQEGDNSSGAKIDELSKGNCSDNKEVSKNGTLSSEDAKSKETRVDLSIDEQKCQSKGDNSSGAKIDELSKGSCSDINEVLKNGTLPSEDDKANETRVDSRLSGPMTNLAENNVTPGSFIPSNTPTDETSVVPTRVQSDCCREETLPTLASGNSMLDDDDMISNNAELCGGENLTPSKRKVITVDTELNVSSTLSKGDNWNLIPDALPSKLGGIGNESCSKRTRLDYNHTVKESCDPCAAEHQDEDDIEPTMVQKDKSDHTSGIGLLKDSVAEDNNILVLDGQNDNEKDSLIYNSNKSVVQPKEKLSSHIANRCKSDSYRFVEYWVPAQISHVQLEQYCATLLSNASILCSSPKIDCVGAIRDVLISIRKCCNHPYVIEPSVQTLLFKDLEEVNYPSEKEKVAEYLNVGIKASGKLQLLDSMLTELRKNNLRALVLFQSIGKDSIGDILDDFLRQRYDVDSFERIDKSLAPSKKQAAMKKFNDKNNKRFVFLMETSACLPSIKLSSIDTVIIFDSDWNPMNDIRSLQKITLDSQFPSIKMFRLYTAFTAEEKALILATQDKTLDINCLYSSRGLNHTLLMWGASRLFDELGVSLDGSTSTSSPKPLLEETVSEFTSCLSDAAEDSDMSNRSTLLKVQQNGGAYRSNFPLLGELKLGSPDEESPQTFWTKLLEGKHFQWKYSCSPSQRSRKRVHCFNNLAGGTNPVNEGITKKRMKVSNNTVDQPTSKSEGEKLPTGVKAGIFGDLVDKPQDNDVGSEKNGRVHDEQRSLHLLLKPQITKLCEVLLLPDNVKNMVDNFLEYVMNNHHVDREPVSILQAFQISLIWTAASLLNHKLDHKASLILAEQNLNFDCKKGEVDLIYSMLRCLKKIFLHRTENYNNTSPKASKSQRVSCTGVAQEVELFKKDLSKSVKKIQKKCEKTLNKIRLMHQEEKQRLRAVNEVQKAELERKYTIELAFTRSCSPNEVTRIEMLKILNIEHKKRIEDLEYQYETSLKDLEDKHSAHILKVQDCEATWVEDLKSWAKNELRNIVALKELGTGFDYPQMCDNMVESMKETGAVVPETNSPSVGKTVEQQNSLVKHDKAIEMDIVVSNDRAVSGNEDHNTTENQHVRQENILSKLSHSREQNSDGATSMTDEAHRCEKFGHESRDGCEKPSLDTTCLPDCREHNSDCATSMTDEDNRCANFGHGFRDGCEMPSLGTACLPDCENATHPVHQCSDGGSSSVPEGQIPGEVQETTNGGDSVSVSERQVQVEMSEAVNFTDCLLQNATHLNPPSSVAQISDRGSIDVPVLDGVSSPRPCQAACSTSCRDTISLSNPPLEQQIPDGLLSIPDGDIPVTVPENSHAVADCHKDIEPSTNAVLVNNSTTNDQEEGVLGTVTSAPVSSRPVDVMQPLEQGQQLPSVESAADNDSAGKMQNSYEQVQLASRSADVVPGNQITVPPKQVHQLAAAELSSNLGMLGLSNSHLATEDEHQPSNVRNIPTHHPEPSSVVPNKDVGQPHSNSALVLHSNQAAVHPVSNSDLDSLTASRVRAQSPNPRNLSTPLEMNNHPIQSAAPSSSRRLPHLSYDPLKIEFEKIQKAIEQNSKSHEDSKLRLKSDFEKELAELRKKYDVKFQEMEIEFQRTKKTLDTNLNTVCVNKLLADAFRSKCLDLKVPGASGMQHDSLPQQLHQLSSQQTATRSLVVSGSSSGQPPATSLLSPSIAHSQPPATSLLSPSIALNSQHMLPPGYNKSGTSSGVSARPLFINTTRSSIARDVQTGGEIRAPAPHLQSSRPPNSVPPSNFHPLLRGLSQTAPSNLRATSTSLAHVPPLQRQTTHQSSPQTGHRPDSAGRLATPNLPFTGSHGNVSNAITSPNVISRLPEAPANLSRFGPNSSSMVANSSHQAASADLVCLSDDD 2078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05108 2078 PANTHER HELICASE PROTEIN MOM1 1478 2078 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1945 1970 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 67 90 - -
Tsu02g05108 2078 Gene3D - 475 501 IPR038718 -
Tsu02g05108 2078 CDD SF2_C_SNF 594 704 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 2054 2069 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 49 66 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1648 1682 - -
Tsu02g05108 2078 PANTHER HELICASE PROTEIN MOM1 1478 2078 IPR039322 GO:0031507
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1575 1594 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 137 157 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 2054 2078 - -
Tsu02g05108 2078 Coils Coil 1149 1169 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 8 25 - -
Tsu02g05108 2078 Gene3D - 1748 1829 - -
Tsu02g05108 2078 Coils Coil 1777 1797 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 211 234 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1709 1743 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 281 317 - -
Tsu02g05108 2078 Gene3D - 502 745 IPR027417 -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 92 135 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1986 2007 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1648 1664 - -
Tsu02g05108 2078 Pfam Helicase conserved C-terminal domain 597 704 IPR001650 -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 235 249 - -
Tsu02g05108 2078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 740 IPR027417 -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1709 1741 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1850 1892 - -
Tsu02g05108 2078 PANTHER HELICASE PROTEIN MOM1 7 1439 IPR039322 GO:0031507
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1986 2028 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 176 319 - -
Tsu02g05108 2078 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 599 760 IPR001650 -
Tsu02g05108 2078 Coils Coil 1108 1128 - -
Tsu02g05108 2078 Coils Coil 1084 1104 - -
Tsu02g05108 2078 MobiDBLite consensus disorder prediction 1 157 - -
Tsu02g05108 2078 PANTHER HELICASE PROTEIN MOM1 7 1439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05108 Tsu-Chr2 60081975 60095343 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05108 - K11642 mtr:MTR_2g095030 2484.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05108 02 60081975 60095343 Tsu02g03619 02 40620884 40633076 PCT