Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05086 ATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGGAGCTGCTTCAATCTTCCTTCATACACTTGCATTCGTGAAGGTCCTGATCACGCTCCAAGGTTTAAAGCTACCGTTAACTTTAACGGCGAGATCTTCGAAAGTCCTCACTACTGTTCAACTCTCCGTCAAGCTGAACACTCCGCTGCTGAAGTTGCTCTCAGTTCGCTCTCTCATCGTGGTCCTTCTCACTCTCTCGCTGCTAAGATTCTCGACGAGACTGGAGTCTACAAGAACCTCTTACAAGAAATTGCACAACGAGTTGGGGCTCCATTGCCTCAGTACACAACTTTCAGATCAGGCCTAGGACACTTACCTGTTTTTACTGGGATAGTAGAATTGGCTGGAATCACATTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCCGAGAAGAATGCAGCTATGGCAGCTTGGTCATCTTTAAAGCAATTGGCGAAAGAGACGGCTAGTTCTTCAACTGAACCTGAGAACAATGACGAATTAGAACAGATCACTATAGCACGAGCTTTGTTGAACTACCGTCTGAAAGAAAAGATTGCAATGTCTAATCCAAATGCTACGATTCCATTTCAGCAGAAGTTTCAGATTCAAAATATCAGGCCGACTAGTTCTCAACCTTCTGCCACCACATCAAAGATCCTTCCCCTAATTTGCCAAAAGTCAAAACCTCGATACAAACCTTCACCGGCAACAGCAAATGAAAATCCTCGAAGCAGGCATCCgccagcagcagcagcaaccaATGACAAGTCTATGGTGCATCCGCCACAATCTTCTGCACTAGAAAGCCGGGTGACCCGTCCTCTGAGGTTCCCTGCAGCAGGAGCAGCACCTTATGTTCCCATTCGACAAATGCGATCACATTGCCATGGAATTGCACCTCCTGTGGCTGTGAGGACCATAGTACCTGTGTTCTCTGCACCACCTCTGCCACCACCTGCCTCAGTCCATCAGGTTATACGGGCTCCTCCTGTACGAGTAGCTCCTCCGGTCAGTATTCGGCAAGCCGTTCCTGTATACGCCGCCCCACCACCAAGGAAAGATGAACCTGCCCCTGTCCAAAAAGATCTACCTGCCAGTAATACCCCTTTCGAGCAAGATAAGCTTCCAGCTAAAATTCTAGAGATGGACAAGACTGAGAACAACCCACATCAATCAGAGACTTTGCTGAGTTTGGATCAgctgaaaatttga 1230 0.4618 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIARALLNYRLKEKIAMSNPNATIPFQQKFQIQNIRPTSSQPSATTSKILPLICQKSKPRYKPSPATANENPRSRHPPAAAATNDKSMVHPPQSSALESRVTRPLRFPAAGAAPYVPIRQMRSHCHGIAPPVAVRTIVPVFSAPPLPPPASVHQVIRAPPVRVAPPVSIRQAVPVYAAPPPRKDEPAPVQKDLPASNTPFEQDKLPAKILEMDKTENNPHQSETLLSLDQLKI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05086 409 MobiDBLite consensus disorder prediction 352 409 - -
Tsu02g05086 409 MobiDBLite consensus disorder prediction 211 275 - -
Tsu02g05086 409 PANTHER - 1 380 - -
Tsu02g05086 409 MobiDBLite consensus disorder prediction 395 409 - -
Tsu02g05086 409 MobiDBLite consensus disorder prediction 211 228 - -
Tsu02g05086 409 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Tsu02g05086 409 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Tsu02g05086 409 SMART DRBM_3 2 69 IPR014720 -
Tsu02g05086 409 SMART DRBM_3 88 154 IPR014720 -
Tsu02g05086 409 Gene3D - 2 83 - -
Tsu02g05086 409 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Tsu02g05086 409 Gene3D - 84 155 - -
Tsu02g05086 409 PANTHER RNA BINDING PROTEIN, PUTATIVE-RELATED 1 380 - -
Tsu02g05086 409 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Tsu02g05086 409 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Tsu02g05086 409 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Tsu02g05086 409 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Tsu02g05086 409 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05086 Tsu-Chr2 59858433 59862828 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05086 - - cam:101510954 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05086 02 59858433 59862828 Tsu02g03591 02 40295403 40299891 PCT