Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03591 atgtaCAAGAATCAGCTTCAAGAGTTAGCACAGAGAAGCTGTTTCAATCTTCCCTCCTACACGTGTCTTAGAGAAGGTCCTGATCACGCGCCGCGGTTTAAAGCTACCGTTAACTTTAACGGTGAGATCTTTGAGAGTCCTCAGTATTGTTCAACACTTCGTCAAGCTGAACATTCAGCTGCTGAGGTGGCACTTAGTTCACTCTCTCATCGTGGTCCTTCTCATTCTCTTGCTGCAAAAATTCTTGATGAAACGGGAGTGTACAAGAATCTCTTACAAGAAATTGCACAAAGGGTAGGGGCTCCGTTGCCGCAGTACACAACTTTCCGGTCAGGCCTAGGACATCTACCTGTTTTTACTGGGACAGTAGAGTTAGCTGGAATTACATTTACCGGTGAACATGCCAAGAATAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCTTGGTCGTCTCTAAAGCAATTGGCGAAAGAAACTGCAAGCTCTTCAACTGAACCGGATAACAATGATGAACTAGAACAGATCACCATAGCACGGGCCTTACTGAACTACCGTCTGAAGGAAAAGATGGCTATGTCCAACCCAAATGCTATGATTCCATTTCCAATGAAGTTTCAGTTTCAAAATCCAAGGCCAACCAGTCCTCAACCTCGACCAGCAACATCAAAGATACTTCCCCTAATTTGCCAAAAGACAGCACATCGAAGCAGGCACCCCGCAACGGCTTCGGCTAGCGGTGATCACAATTCCATGATGTCACCGCTTTCTTCTACACCAGAAAGCCGATGGGCCCGTCGTCCGAAATTCCCTGCAGCAGGAGCAGCACCTTATGTGCCCATTCGACATATGCGATCATCTTGCCAGGGAGTTGCACCTCCAGTGACCATAAGAACTGCAATACCTGTATTCTCCCCGCCACCATCGGCAGTGTCCCCTCAAGTAATGCGGCCTCCTCCTATGCGAGTTGCTCCTCCGATCAATATTCGGCAGGCAGTTCCAGCGTATGCAGCTCCAGCGATTCGTAAAGATGAACCTGTTCTCATCAGCAAAGACAAACCAGTACCAGTACCAGCACCAGCTGTATACGCTGTTCCACCCATTCGAGTAGATGAACCTGTTCCCAGCAGCAAAGTTGATCCAGCACCGGCAGAAAATGCTGCTCGAGTAGATGAACCTGTTCATATTAGCAAGGATGATCCTGCTCCAGCAGTTCAAAAAGACGAACCGGTTCCAATCAGCAAAGATGATCCCGTGCCTACTATTGATGCCCCTGATCAGGAAGATAAAGTTGATACGAAAACTGAGAATATTCCAGCAGAATCTGACAACATGCAGATGTTGGAGCAGCTGAAAATTTGA 1362 0.4721 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALSSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEHAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPDNNDELEQITIARALLNYRLKEKMAMSNPNAMIPFPMKFQFQNPRPTSPQPRPATSKILPLICQKTAHRSRHPATASASGDHNSMMSPLSSTPESRWARRPKFPAAGAAPYVPIRHMRSSCQGVAPPVTIRTAIPVFSPPPSAVSPQVMRPPPMRVAPPINIRQAVPAYAAPAIRKDEPVLISKDKPVPVPAPAVYAVPPIRVDEPVPSSKVDPAPAENAARVDEPVHISKDDPAPAVQKDEPVPISKDDPVPTIDAPDQEDKVDTKTENIPAESDNMQMLEQLKI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03591 453 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Tsu02g03591 453 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Tsu02g03591 453 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Tsu02g03591 453 MobiDBLite consensus disorder prediction 372 453 - -
Tsu02g03591 453 PANTHER - 1 348 - -
Tsu02g03591 453 MobiDBLite consensus disorder prediction 235 264 - -
Tsu02g03591 453 MobiDBLite consensus disorder prediction 421 437 - -
Tsu02g03591 453 Gene3D - 2 83 - -
Tsu02g03591 453 Gene3D - 84 155 - -
Tsu02g03591 453 MobiDBLite consensus disorder prediction 391 414 - -
Tsu02g03591 453 SUPERFAMILY dsRNA-binding domain-like 88 158 - -
Tsu02g03591 453 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Tsu02g03591 453 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 348 - -
Tsu02g03591 453 MobiDBLite consensus disorder prediction 237 261 - -
Tsu02g03591 453 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Tsu02g03591 453 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Tsu02g03591 453 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Tsu02g03591 453 SMART DRBM_3 88 154 IPR014720 -
Tsu02g03591 453 SMART DRBM_3 2 69 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03591 Tsu-Chr2 40295403 40299891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03591 - - gmx:100816445 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03591 02 40295403 40299891 Tsu02g03591 02 40295403 40299891 ECH
Tsu02g05086 02 59858433 59862828 Tsu02g03591 02 40295403 40299891 PCT