Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05052 ATGGGAAATAGATCCACCCTTTTGATCATGCTTCTTATTCTTTGTCATGGTGTATCCATGACAATGGGAATATGTGATGTAGAAGATCAAGTAGATAACTCTTCAAAGTCAGACAAATTGTTCTTGTTGGAAAACTCCAAGCATGTGGTGAAGACTGATGCAGGAGAAATGAGAGTGTTGGAGAGTTATGGTGGTAGAGTTTCTGAGAGACGTTTGCATATTGGTTTCATTGATATGGAACCAAACTCACTTTTTGTTCCTCAATATCTTGATTCCACTCTCATCTTATTTGTCCTTTCAgGGGAAGCAAAGGTGGGATTCACGTACGAAAATAAATTAGCCGAGAGGAAATTGAAGAAGGGAGATGTGTATCAAATTCCAGCTGGTTCTGCATTCTATTTGTCTAATACTAAGGATTCTCAAAAGCTTCACATTGTTTGCAGCATTGACCCCTCTGAGAGTTTAGGACTAGGCATTTTCCAGTCTTTCTATATTGGAGGAGGATCCAATCCAGTATCGGTACTTTCCGGATTCCAGCCTCAAATCCTTGAATCCGCTTTTAATGTATCGGAATCagagttgaagaaatttttcAGTCAGCAACATGAGGGTCCAATTGTGCACGTAGGTCATTCACATTCCAAAGCCTCAAGCTTATGGACCAAATTCCTTCAACTAAAAGAGGATGAAAAACTTCACCACATGAAGAAAATTATGCAagatcaagaagatgaagatgataatgaagaagtagagaaaaaaataagttgGTCTTGGAGGAAGTTATTGGAATCTGTATTTGGTGATGAGATAGAAAACGAGAAAAGAGACAATGTTGCCCATAAATCACCTCACTCGGTCAATCTCTATGACAGAAAACCAGATTTCAAAAACAGTTATGGCTGGAGTGTTGCTCTAGACGGTTCTGAATATTCTCCTCTCAAAAGTTCCGGCATTGGCATTTATCACGTCAATCTCAAACCGGGAACGATGATGACACCGCATGTAAATCCAAGCGCAACCGAGTATGCAATAGTGGTAAGAGGTGTAGGTAGACTTCAAGTAGCATTTCCAAATGGAACCCTTGCAATGGACACACATATAAAAGAAGGAGATGTTTTCTTCATACCAAGATACTTTGCATTCAGTCAAATAGCAGCAAATGTAAGTGATGAACCACTAGATTTTTTTGGATTCACAACTTCTGCAAAGAAGAATAAGCCACAATTTTTGGTTGGTGCAAATTCGCTTATGAAAAGCATGATGGGACCTGAACTTGCTGCTTCTTTTGGAGTGAGTGAGGATACAATGAAAAACATCCTTAATGCACAACATGAGTCTGTTATATTACCCTCATCTGTAAGCCACTAG 1371 0.3764 MGNRSTLLIMLLILCHGVSMTMGICDVEDQVDNSSKSDKLFLLENSKHVVKTDAGEMRVLESYGGRVSERRLHIGFIDMEPNSLFVPQYLDSTLILFVLSGEAKVGFTYENKLAERKLKKGDVYQIPAGSAFYLSNTKDSQKLHIVCSIDPSESLGLGIFQSFYIGGGSNPVSVLSGFQPQILESAFNVSESELKKFFSQQHEGPIVHVGHSHSKASSLWTKFLQLKEDEKLHHMKKIMQDQEDEDDNEEVEKKISWSWRKLLESVFGDEIENEKRDNVAHKSPHSVNLYDRKPDFKNSYGWSVALDGSEYSPLKSSGIGIYHVNLKPGTMMTPHVNPSATEYAIVVRGVGRLQVAFPNGTLAMDTHIKEGDVFFIPRYFAFSQIAANVSDEPLDFFGFTTSAKKNKPQFLVGANSLMKSMMGPELAASFGVSEDTMKNILNAQHESVILPSSVSH 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05052 456 CDD cupin_7S_vicilin-like_N 49 209 - -
Tsu02g05052 456 CDD cupin_7S_vicilin-like_C 294 447 - -
Tsu02g05052 456 Pfam Cupin 44 191 IPR006045 -
Tsu02g05052 456 Pfam Cupin 288 436 IPR006045 -
Tsu02g05052 456 PANTHER OS03G0336100 PROTEIN 1 454 - -
Tsu02g05052 456 SMART Cupin_1_3 287 438 IPR006045 -
Tsu02g05052 456 SMART Cupin_1_3 40 195 IPR006045 -
Tsu02g05052 456 Gene3D Jelly Rolls 279 453 IPR014710 -
Tsu02g05052 456 Gene3D Jelly Rolls 32 222 IPR014710 -
Tsu02g05052 456 PANTHER OS03G0336100 PROTEIN-RELATED 1 454 - -
Tsu02g05052 456 SUPERFAMILY RmlC-like cupins 28 447 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05052 Tsu-Chr2 59618135 59626219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05052 32 450 Miscellaneous Gene Families AT2G18540 28.404 5.49e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05052 - - gmx:100818796 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05052 02 59618135 59626219 Tsu02g03543 02 39798352 39801913 PCT