Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03543 ATGACAAAAATAACTACCCTTTTGTTCTTGTTACTCCTTGTTGGAGTAACCATAACAAtgtgtgaagatgaagaaaaatcagaagggtcatcatcatcatcaagcAAGTTGTTTTTGTTGGAAAATTTTAAGAGTGTTGTGAAGACTGATGCAGGAGAAATGAAGTTGTTTGAAAATAATGATGATAAGTTTTTGGATAGAAGGTTGCATATTGGTTTGATTAATATGGAACCAAGATCATTGTTTATTCCTCAATATCTTGACTCCAATTTGATCATATTTGTCCGTAGAGGGGTAGCAAAGTTGGGATTCATATATGGAGATGAGCTAGAGGAAAGGAGAATAAAGACAGGGGACTTGTATGTAATTCCAGCAGGTTCTGTATTCTATTTAGTGAATATAGATGAAGGTCAGAGACTTCATGTTATTTCCAGCATTGACCCCTCTACAAGCTTAGGTGACACTTTTCAGCCTTTCTATATTGGAGGAGATAATCAACAATCAATCCTTGCTGGATTCGAACCGGCTATTCTTGAAACCGCCTTTAATGAATCGAGAGCAAAGATACAGAGAATCTTCAAGAAGAAACAAGATGGTCCAATTGTGTTCATAGATGATTCTCATTCTCCTAGCCTATGGACCAAATTCCTTCAACTGAAGAAGCAGGAAAAAGTACAAAAACTTAAGACATTGGTACAAAgtcaagaagaagatgaagaggaaaagCAAACAAGTTGGTCATGGAGGAAGCTCATGGAAAGTGTATTAGGAAAAGTGAACAAGATCGTAGATAATAAAGACAGAGCAGATTCCCCTGACTCTTATAACCTCTATGACAGAAAACCCGATTTCAGAAATGCTTATGGTTGGAGCACTGCATTGGATGGTGGCGATTATTCTCCGCTTAAAATACCCGACATTGGCGTTTTTCATGTCAATCTCACCGCGGGATCTATGATGGCACCACATGTGAATCAAAAGGCAACAGAGTATACCATAGTATTGAGAGGCTATGGAAAAATTCAGATACTATTTCCAAACGGAAGAAATGCAATGGAAACAGAAATCAAAGTAGGAGACATATTCTACATACCAAGATACTTTCCTTTCTGTCAAATAGCATCAAGAAATGGACCATTAGAGTTCATTGGATTCACAACCTCATCAGAAAAGAGTAATCCACAGTTTCTAGCAGGTGCTGCATCACTTCTTAAGACTCTTTTAGGACCTGAACTTGCAGCTTCATTTGGTGTGAGTGTAGACACTATGAGACATGTTGTTGATGCTCAACATGATGCTGTTATACTTTCTTCAACATGGGCTGCTCCTGGTGGTGGTGGGGGGAAAAAAGAGGAAGATGTTTTGCATGTTGAAAATGTTGTTAATGATGTTGTTATGGATGTTTTTGAATAG 1413 0.3595 MTKITTLLFLLLLVGVTITMCEDEEKSEGSSSSSSKLFLLENFKSVVKTDAGEMKLFENNDDKFLDRRLHIGLINMEPRSLFIPQYLDSNLIIFVRRGVAKLGFIYGDELEERRIKTGDLYVIPAGSVFYLVNIDEGQRLHVISSIDPSTSLGDTFQPFYIGGDNQQSILAGFEPAILETAFNESRAKIQRIFKKKQDGPIVFIDDSHSPSLWTKFLQLKKQEKVQKLKTLVQSQEEDEEEKQTSWSWRKLMESVLGKVNKIVDNKDRADSPDSYNLYDRKPDFRNAYGWSTALDGGDYSPLKIPDIGVFHVNLTAGSMMAPHVNQKATEYTIVLRGYGKIQILFPNGRNAMETEIKVGDIFYIPRYFPFCQIASRNGPLEFIGFTTSSEKSNPQFLAGAASLLKTLLGPELAASFGVSVDTMRHVVDAQHDAVILSSTWAAPGGGGGKKEEDVLHVENVVNDVVMDVFE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03543 470 Coils Coil 468 470 - -
Tsu02g03543 470 CDD cupin_7S_vicilin-like_N 46 204 - -
Tsu02g03543 470 CDD cupin_7S_vicilin-like_C 282 433 - -
Tsu02g03543 470 SMART Cupin_1_3 41 190 IPR006045 -
Tsu02g03543 470 SMART Cupin_1_3 275 424 IPR006045 -
Tsu02g03543 470 Gene3D Jelly Rolls 267 439 IPR014710 -
Tsu02g03543 470 PANTHER OS03G0336100 PROTEIN 5 445 - -
Tsu02g03543 470 Pfam Cupin 46 142 IPR006045 -
Tsu02g03543 470 Pfam Cupin 275 422 IPR006045 -
Tsu02g03543 470 SUPERFAMILY RmlC-like cupins 44 433 IPR011051 -
Tsu02g03543 470 Gene3D Jelly Rolls 27 218 IPR014710 -
Tsu02g03543 470 PANTHER OS03G0336100 PROTEIN-RELATED 5 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03543 Tsu-Chr2 39798352 39801913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03543 1 444 Miscellaneous Gene Families AT2G18540 28.085 6.17e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03543 - - gmx:547942 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03543 02 39798352 39801913 Tsu02g03543 02 39798352 39801913 ECH
Tsu02g05052 02 59618135 59626219 Tsu02g03543 02 39798352 39801913 PCT