Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04914 ATGACTAACTACGATACCAATCCCTTCGCCGAAGAAGAGGTTAATCCTTTCGCCAACCCAGGAAGTGCAAAGCTCTCACCCCTTCCTCATGAGCCACATGATCGCGGGGCAACTGTTGACATTGCTCTTGATTTGCCAAAGGACCTCAAAGTAAAGGAAAAAGAACTTCAAGCTAGAGAGGCTGAATTGAAAAGAAGAGAACAGGAGCTAAAAAGAAAGGAAGATGCTATAGCGCGAGCTGGAATAgttatagaggaaaaaaattggCCACCTTTTATCCCTCTCATTCATCATGACATTGCAAAGGAAACACCGATTCATCTTCAAGCGATCCAGTATGTTGCGTTTACAACATGGTTAGGTTtgattttttgtcttttatataatattgCGGCTGTTACGGTAGCTTGGCTCAAAGGAGAAGGACTGTCAATTTGGTTTCTTTCTATCATATACTTTATTTCTGGTGTTCCTGCATCCTACGTGATGTGGTATCGTCCTCTTTATCGTGCTACGAGGACGGACAGTGCTTTGAAGTTTGGCTGGTTTTTCATATGTTACTCGGCAAGTTTTATATTCCTATCATTCCACATTCTGTTTTGCGTTTTGGCTGCAATTGCACCTCCACTTGTCTTCAAAGGAAAATCTCTCACAGGTGTACTGCCTGCACTTGAGATCCTGACCTACAATCCATTGGTTGGGATACTCTACCTTGTTGGATGTGGTTTTTTCACCATTGAATCACTGCTGAGCATATGGGTTAttcagCAAGTATACATGTACTTCCGCGGCAGTGGGAAAGCTGCGCAGATGAAACGCGAAGCTACAATGGGGGCCATGATGCATGCTCTATGA 855 0.4175 MTNYDTNPFAEEEVNPFANPGSAKLSPLPHEPHDRGATVDIALDLPKDLKVKEKELQAREAELKRREQELKRKEDAIARAGIVIEEKNWPPFIPLIHHDIAKETPIHLQAIQYVAFTTWLGLIFCLLYNIAAVTVAWLKGEGLSIWFLSIIYFISGVPASYVMWYRPLYRATRTDSALKFGWFFICYSASFIFLSFHILFCVLAAIAPPLVFKGKSLTGVLPALEILTYNPLVGILYLVGCGFFTIESLLSIWVIQQVYMYFRGSGKAAQMKREATMGAMMHAL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04914 284 Pfam SCAMP family 86 264 IPR007273 GO:0015031|GO:0016021
Tsu02g04914 284 MobiDBLite consensus disorder prediction 1 31 - -
Tsu02g04914 284 Coils Coil 49 76 - -
Tsu02g04914 284 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 22 284 IPR007273 GO:0015031|GO:0016021
Tsu02g04914 284 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 22 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04914 Tsu-Chr2 58174233 58177982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04914 39 284 Miscellaneous Gene Families AT2G20840 74.390 6.12e-127 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04914 K19995 - gmx:100820206 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04914 02 58174233 58177982 Tsu02g04914 02 58174233 58177982 ECH
Tsu02g04914 02 58174233 58177982 Tsu06g01121 06 10153672 10160908 PCT