Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04857 ATGTCTGCAAATACAATGGCTGTTACTCAAATTAGAGTTTCATATCTTACAAACTCACTTTCTAGTCACAATTCTTGGACTTTCACTAATCAATCACGGTTCTTATCActacaaaaatcaaattcaagGATTATCATGCATGCTAAATTATCCATCAACTCCATTGCTCTCAATGATAAGTTGGCACCTTTACAAACTGATGATAAGACCAAAAATTTGGATCAAGTGAaaagaaggagccaagaagcATTGTTAAGCTCGAGTGATCCAATTGTAACATTGAAGATGATTGACTCAATCCAAGGGCTGGGAATTGGTCACCATTTGGAAAATGAGATTAATTTGCAACTTAGGAGGATAAGTGATTGGGATGCTTCTAATGACCTCTTTGCTACATCACTTCAATTTCGGTTGCTAAGGCACAATGGCTGGTCAACAAGTTCTGACATATTCAAGAAATTCTTGGACAAGAGTGGCAATTTCAAGGAGTCACTAACCAAAGATATTTGGGGTATGTTGAGTCTTTATGAGGCATCATATTTAGGGACAGAGGATGAAGAAGTATTAAAGAAAGCAATGGAATTTTCAAGGGCTCAACTAAAAGAATTAATCCCACATCTTAATCCTCAAGTAAGTAAGTGCTTTGAAAGATCCTTAACACTTCCAAAGCACCTAAGAATGGCCAGATTAGAAGCTAGAAATTACATGGAGGAATATAGCCAAACAAGTAACCAAATACCAGCTCTTTTGGAATTGGCAAAGATAGACTCTAACATGATTCAATCACTACACCAAAGAGAATTAGCAGAAATATGCAGgTGGTGGAAAGAGTTGGGCCTGGTTGACAAACTTGGTTTTGCAAGAGATAGACCAACTGAGTGCTTCTTGTGGACAGTGGGGCTTTTTCCAGAACCAAGTTATTCAAATTGCCGTATTGAACTTGCTAAAACTGTCTCCATTTTGCTAGTTATGGATGATGTCTTTGACACATATGGCACATTAGATGAACTTGTTCTTTTCACAAATGCAATTAAAAGGTGGGACCTTGATGCAATGGAGCAACTTCCTGAATACATGAAAATATGCTATATGGCATTATATAACACCACAAATGAAATTGCATATAGAATTCAGAAAGAACATGGGCTAACTGTTGTTTCCCATTTAAAAAGAACGTGGATTGACATATTTGAAGCATTTCTTGAAGAAGCTAAATGGTTCAATAGTGGATATGTGCCAAGTTTTAAGACATATTTAGATAATGGGGTGATTTCTGCTGGATCATGCATGGCATTGATGCATACATTTTTCCTCATTGGTGATGGTCTCTCAAATGAAAACATTACAATGATGAAGACATATCCTAGACTCTTCTCTTGCTCCGGAGAAATTCTTCGGCTTTGGGACGATTTAGGAACTTCAACGGAGGAACAAGAAAGAGGGGATAATGCTAGCAGCATAGAATGCTTTATGGGagaaaataacattttagaTGAAAATGAAGGAAGGAAACACATAAGGCTTCTAATAAGGAACTTGTGGCAAGAGCTTAATGGTCTTGCCATGTCCAAAACCATACCTTTGTCTATTGTCAATGCTTCTCTTAACATGGCTAGAACTGCTCAAGTTATTTATCAACATGGAGATGATAAAAGCACATTTACTGTTGATGACTATGTGCAAACATTGATCTTCGCATCATTACCTACTAGCTATATCCATTGA 1725 0.3594 MSANTMAVTQIRVSYLTNSLSSHNSWTFTNQSRFLSLQKSNSRIIMHAKLSINSIALNDKLAPLQTDDKTKNLDQVKRRSQEALLSSSDPIVTLKMIDSIQGLGIGHHLENEINLQLRRISDWDASNDLFATSLQFRLLRHNGWSTSSDIFKKFLDKSGNFKESLTKDIWGMLSLYEASYLGTEDEEVLKKAMEFSRAQLKELIPHLNPQVSKCFERSLTLPKHLRMARLEARNYMEEYSQTSNQIPALLELAKIDSNMIQSLHQRELAEICRWWKELGLVDKLGFARDRPTECFLWTVGLFPEPSYSNCRIELAKTVSILLVMDDVFDTYGTLDELVLFTNAIKRWDLDAMEQLPEYMKICYMALYNTTNEIAYRIQKEHGLTVVSHLKRTWIDIFEAFLEEAKWFNSGYVPSFKTYLDNGVISAGSCMALMHTFFLIGDGLSNENITMMKTYPRLFSCSGEILRLWDDLGTSTEEQERGDNASSIECFMGENNILDENEGRKHIRLLIRNLWQELNGLAMSKTIPLSIVNASLNMARTAQVIYQHGDDKSTFTVDDYVQTLIFASLPTSYIH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04857 574 Gene3D Farnesyl Diphosphate Synthase 65 553 IPR008949 -
Tsu02g04857 574 Gene3D - 89 245 IPR036965 GO:0010333|GO:0016829
Tsu02g04857 574 SFLD Terpene Cyclase Like 1 C Terminal Domain 248 565 IPR034741 -
Tsu02g04857 574 Pfam Terpene synthase family, metal binding domain 250 516 IPR005630 GO:0000287|GO:0010333|GO:0016829
Tsu02g04857 574 SUPERFAMILY Terpenoid synthases 247 551 IPR008949 -
Tsu02g04857 574 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 63 243 IPR008930 -
Tsu02g04857 574 CDD Terpene_cyclase_plant_C1 68 565 IPR044814 GO:0010333|GO:0016102
Tsu02g04857 574 Pfam Terpene synthase, N-terminal domain 62 205 IPR001906 GO:0010333|GO:0016829
Tsu02g04857 574 Coils Coil 225 245 - -
Tsu02g04857 574 PANTHER OS04G0344100 PROTEIN-RELATED 47 567 - -
Tsu02g04857 574 PANTHER R-LINALOOL SYNTHASE PROTEIN-RELATED 47 567 - -
Tsu02g04857 574 SFLD Isoprenoid Synthase Type I 248 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04857 Tsu-Chr2 57700620 57707178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04857 - - gmx:100807904 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04857 02 57700620 57707178 Tsu02g04857 02 57700620 57707178 ECH
Tsu02g04857 02 57700620 57707178 Tsu06g01185 06 10932130 10939028 PCT