Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04816 ATGGATTCAGTGAAGCAAACTAGCGCTGCTGAGGAACCACTTTTATTCACTCACAGCGATACGCCGTCTAAACATAACGAATTCGACGGCGAGCTTGAGAGAATACTATCAGACACCACCGTTCCATTCTTCAACCGTATCAGTTCCGCTTCATTGATTGAGCTTAAACTATTGTTCTTCTTAGCTGCTCCTGCTGTTTTCGTTTATCTTATTAATTATGTTATGTCTATGTCCACTCAAATTTTCTCCGGTCACCTTGGAAATCTTGAACTCGCCGCCGCGTCACTCGGTAACACCGGTATCCAAATCTTTGCTTATGGTCTTATGTTGGGTATGGGAAGTGCAGTTGAAACACTATGTGGACAAGCATTTGGAGCAGAAAAATTCGACATGCTAGGAATATATTTACAAAGATCGACTATTCTTCTAACAATAACCGGTTTTTTTCTGACCGTTATTTATGTCTTAAGTGAACCAATCCTAGTATTCATCGGACAATCACCAAGAATCGCTTCTGCAGCCGCACTTTTTGTCTACGGACTTATCCCACAAATATTCGCTTATGCAGTCAATTTCCCAATCCAAAAATTCCTTCAAGCACAAAGCATTGTTCTACCAAGTGCTTATATTTCAGCAGGAACTTTAGTTGTTCATTTGATACTAAGTTGGGTTGTTGTGTTTAAGATTGGTTTAGGCTTATTGGGTGCTTCATTGGTTTTGAGTTTTTCTTGGTGGATTATTGTTATTgctcaatttatttatattgtgaaGAGTGAAAAGTGTAAGAGGACATGGAAAGGGTTTAGTTTGGAGGCATTTTCGGGGTTGCCGGAGTTTTTTAAACTGTCGGCCGCATCGGCGGTTATGTTGTGTCTTGAATCTTGGTATTTTCAGATTCTTGTTTTGCTTGCTGGGCTTCTTCCTAACCCTGAAGTGGCTCTTGATTCTCTTTCTATCTGTACCACAATTTCTGGATGGGTGTTCATGATCTCAGTTGGATTCAATGCAGCTGCAAGTGTGAGAGTGAGCAATGAACTAGGAGCAAGAAATCCAAAATCAGCATCATTTTCAGTTGTGGTGGTGACATTGATATCATTTGTAATATCAGTAATAGCAGCAATGATTGTGCTTGCATTGAGAGATGTTATTAGCTATATTTTCACAGAAGGTGaagttgttgctgctgctgtttCAGATCTTTGTCcacttctctctctttctcttgtcCTCAATGGCATTCAACCTGTCTTATCTGGGGTTGCTGTTGGCTGTGGATGGCAAGCATTTGTTGCTTATGTGAATGTAGGTTGCTATTATATAGTTGGCATACCATTGGGCGCGGTTCTCGGATTTTACTTCAATTTTGGCGCTAAGGGAATATGGCTTGGAATGCTTGGTGGAACAACTATGCAGACAATTATTTTAATGTGGGTGACATTTAGAACAGATTGGAACAAAGAGGTGGAAGAAGCAGCCAAGAGATTGAACAAATGGGAGGAGAGAAAGGAGCCTctattaaactaa 1524 0.3865 MDSVKQTSAAEEPLLFTHSDTPSKHNEFDGELERILSDTTVPFFNRISSASLIELKLLFFLAAPAVFVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQIFAYGLMLGMGSAVETLCGQAFGAEKFDMLGIYLQRSTILLTITGFFLTVIYVLSEPILVFIGQSPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAGTLVVHLILSWVVVFKIGLGLLGASLVLSFSWWIIVIAQFIYIVKSEKCKRTWKGFSLEAFSGLPEFFKLSAASAVMLCLESWYFQILVLLAGLLPNPEVALDSLSICTTISGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTLISFVISVIAAMIVLALRDVISYIFTEGEVVAAAVSDLCPLLSLSLVLNGIQPVLSGVAVGCGWQAFVAYVNVGCYYIVGIPLGAVLGFYFNFGAKGIWLGMLGGTTMQTIILMWVTFRTDWNKEVEEAAKRLNKWEERKEPLLN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04816 507 TIGRFAM matE: MATE efflux family protein 64 461 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g04816 507 PANTHER PROTEIN DETOXIFICATION 11 494 - -
Tsu02g04816 507 CDD MATE_eukaryotic 54 490 IPR045069 GO:0042910|GO:1990961
Tsu02g04816 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 11 494 - -
Tsu02g04816 507 Coils Coil 481 501 - -
Tsu02g04816 507 Pfam MatE 286 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g04816 507 Pfam MatE 64 224 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04816 Tsu-Chr2 57347353 57352913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04816 K03327 - gmx:100801718 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04816 02 57347353 57352913 Tsu02g04816 02 57347353 57352913 ECH
Tsu02g04816 02 57347353 57352913 Tsu06g01217 06 11318992 11328257 PCT