Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03649 ATGGGGaagaagaaaaataagggtaacaacaacaacaatggaggaaaggaagaaaacaacAATGGAGGAAATAAGGAAGAGAGCAAGAACAACAACACATTGATCTTGAAAGTTCATATGCATTGTGACGCCTGCACTTCCAAAATCACCAAATACCTTCACTCCATCAAAGgtGTTGAAACGGTGAAAACAGAGAGTGAGACCGGAAAAGTAACTGTCACCGGAAAAGTGGACCCCATAAAAGTGAGGGATAATCTTGCGGAGAAGATTAAGAAGAAAGTTGAACTTATTTCTCCACAACCCAAAAAGGAGAAAGAGAATAACAACAAATCTGATGAGAAGAAAACTGAtgacaaacaaaacaaagataaTAATAAAGAGTTGATTACTACTTCTGTTTTGAAAATGGTACTACACTGTCAAGGTTGTATTGACAAGATTGGAAAGATTGTGTTGAAAACTAAagGGGTCCTTGATATGAAGATAGACAAAGAGAAAGATAATGTGACTGTAAAGGGTACTATGGATGTGAAAGGACTAGTTGAGAATTTATCAGAGAAGCTTAAGAGGAAGGTTGAGGTTGTTTCTCCTAAGAAGGAAGGTGGTGGTGAGAAGGAAGGAGGTGGTGGAGGTGGAGGAGGGAAGAAGAACAagggtggtggtggtggcggaGGAGGAGGAGAAGGGGGAAATAATGAAGGAGGAGAAGTTAAAATGATGGAGCATTTAGTTCAAGTTCAACCACCATTTGGTTTTGGTTATGGAAATGTTGAGGCATATAATAATGGACAAGTTTACCAAGAGTTGATACATTTTCATATGAATTCACAACCACCTCAAATGTTTAGTGATGAGAATCCTAATGCTTGCATTGTCATGTGA 882 0.3435 MGKKKNKGNNNNNGGKEENNNGGNKEESKNNNTLILKVHMHCDACTSKITKYLHSIKGVETVKTESETGKVTVTGKVDPIKVRDNLAEKIKKKVELISPQPKKEKENNNKSDEKKTDDKQNKDNNKELITTSVLKMVLHCQGCIDKIGKIVLKTKGVLDMKIDKEKDNVTVKGTMDVKGLVENLSEKLKRKVEVVSPKKEGGGEKEGGGGGGGGKKNKGGGGGGGGGEGGNNEGGEVKMMEHLVQVQPPFGFGYGNVEAYNNGQVYQELIHFHMNSQPPQMFSDENPNACIVM 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03649 293 SUPERFAMILY HMA, heavy metal-associated domain 130 193 IPR036163 GO:0046872
Tsu02g03649 293 Coils Coil 102 122 - -
Tsu02g03649 293 MobiDBLite consensus disorder prediction 194 235 - -
Tsu02g03649 293 SUPERFAMILY HMA, heavy metal-associated domain 33 96 IPR036163 GO:0046872
Tsu02g03649 293 Gene3D - 27 105 - -
Tsu02g03649 293 Gene3D - 128 200 - -
Tsu02g03649 293 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3 5 293 - -
Tsu02g03649 293 MobiDBLite consensus disorder prediction 95 124 - -
Tsu02g03649 293 CDD HMA 138 173 IPR006121 GO:0046872
Tsu02g03649 293 ProSiteProfiles Heavy-metal-associated domain profile. 40 92 IPR006121 GO:0046872
Tsu02g03649 293 CDD HMA 36 92 IPR006121 GO:0046872
Tsu02g03649 293 Pfam Heavy-metal-associated domain 37 93 IPR006121 GO:0046872
Tsu02g03649 293 Pfam Heavy-metal-associated domain 138 193 IPR006121 GO:0046872
Tsu02g03649 293 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 5 293 IPR044594 GO:0046872
Tsu02g03649 293 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03649 Tsu-Chr2 41047850 41049571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03649 - - mtr:MTR_4g057765 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03649 02 41047850 41049571 Tsu02g03649 02 41047850 41049571 ECH
Tsu02g05126 02 60289808 60291216 Tsu02g03649 02 41047850 41049571 PCT